Pairwise Alignments

Query, 923 a.a., DNA polymerase I from Pseudomonas fluorescens FW300-N2E3

Subject, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

 Score = 1046 bits (2706), Expect = 0.0
 Identities = 536/937 (57%), Positives = 684/937 (72%), Gaps = 28/937 (2%)

Query: 5   PLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAKGG 64
           PL+L+DGSSYLYRAFHA P   ++  +PT A+ GV+NM++S+ +Q+     AV+FDAKG 
Sbjct: 8   PLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKGK 67

Query: 65  TFRDDLYAEYKANRPSMPDDMRVQIEPLHASVIALGFPLLCVDGVEADDVIGTLARSSAA 124
           TFRD++Y +YKA+RP MPD++R Q+EPLH  + A+G PLL ++GVEADDVIGTLAR ++ 
Sbjct: 68  TFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQ 127

Query: 125 ADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDVAGVKEKFGVAPEQIIDYLALMGDSS 184
           A  PV+ISTGDKDMAQLVD +ITL+NTMT   +D  GV EKFG+ PE IIDYLALMGD  
Sbjct: 128 AGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKV 187

Query: 185 DNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEEHKEMAFLS 244
           DNIPGVPG+G KTA+ LL G+ GGL  LYA LD +  L  RG+KT+  KLEE++  A LS
Sbjct: 188 DNIPGVPGVGEKTATALLQGI-GGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLS 246

Query: 245 YQLATIKVDVPLDVGLDDLHLREPDREKLAELYTLLEFKSWFEEV----------QRDAK 294
           YQLATIK DV L+     L  + PDR+ L  LY  L FKSW  E+              K
Sbjct: 247 YQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGTGIVTADEQTK 306

Query: 295 RAGQEVVAAVEEAVADSDGP-------HYTTVLTQADFDVWLKKLQNATLFAFDTETTGI 347
            +   V  A   A A  + P        Y T+L + DF +WL+KL+ A LFAFDTET  +
Sbjct: 307 TSSVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNL 366

Query: 348 DAQQAQLVGLSFAVQANEAAYIPLTHSYMGVPDQLDRDTVLRALKPILEDPSKLKVGQHA 407
           D   A LVG+SFAV   EAAY+P+ H Y+  P QL+RD V+  LKP+LED SK KVGQ+ 
Sbjct: 367 DYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQLKPLLEDESKAKVGQNL 426

Query: 408 KFDMNILANCAIGGDQSCGIMVQGIAFDTMLESYVLDSTATRHDMDSLALKYLGYTTTSF 467
           K+D +++A          G+ ++GI  DTML+SYV +S   +HDMDSLAL++L ++  SF
Sbjct: 427 KYDASVMARY--------GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISF 478

Query: 468 QDIAGKGVKQLTFDQISLELAGPYAAEDADVTLRLHQTLHEKLDAIPSLSKVLSEIEMPL 527
           + +AGKG  QLTF+QI+LE A  YAAEDADVTLRLHQ +H  ++    L +V  EIEMPL
Sbjct: 479 EQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPL 538

Query: 528 VPVLARIERQGALVDANLLGIQSVELGDKLVALEREAFAIAGEEFNLGSPKQLGVILYEK 587
           VPVL+RIER G ++D  LL  QS E+  +L  LE+ A+ +AG+ FNL SPKQL  IL+E+
Sbjct: 539 VPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQ 598

Query: 588 LGLPILSKTAKGQASTAEAVLAELAEQDYPLPKVLMQYRSLSKLKSTYTDRLPEQINPRT 647
           + LP+L KT  G  ST E VL ELA  DYPLPKVL++YR L+KLKSTYTD+LP+ INP T
Sbjct: 599 MKLPVLQKTPSGTPSTNEEVLQELA-LDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPST 657

Query: 648 GRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAPKGYKLLAADYSQIELR 707
           GR+HTSYHQAV ATGRLSS+DPNLQNIP+R  EGRRIRQAF+AP G+K++A DYSQIELR
Sbjct: 658 GRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELR 717

Query: 708 IMAHLAKDEGLLHAFRNDLDVHKATAAEVFGVELADVTTDQRRSAKAINFGLIYGMSAFG 767
           IMAHL+ D+ LL AFR+  D+H ATAAE+ GV +  V+++QRR AKA+NFGLIYGMSAFG
Sbjct: 718 IMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFG 777

Query: 768 LAKQIGVDRKQSQAYIDRYFARYPGVLEYMERTRAQAAEQGFVETIFGRRLYLPDINAKN 827
           LAKQ+G+ R ++Q Y+D+YF RYPGV++YME TR++AA+ G+VETIFGRRL+LP+I ++N
Sbjct: 778 LAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRN 837

Query: 828 PALRKGAERTAINAPMQGTAADIIKKAMVAVDNWLLTSGLD-AKVILQVHDELVLEVRED 886
              RK AER AINAPMQGTAADIIKKAM+ VD W+   G    K+++QVHDELV EV+E 
Sbjct: 838 AMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKES 897

Query: 887 LIDQVREEIRVHMSSAATLDVPLLVEVGVGNNWDEAH 923
            + ++  +++  M SAA L VPL+ E G G+NW++AH
Sbjct: 898 SLSEIESKVQQLMESAAELAVPLVAEAGHGDNWEQAH 934