Pairwise Alignments

Query, 923 a.a., DNA polymerase I from Pseudomonas fluorescens FW300-N2E3

Subject, 1004 a.a., DNA polymerase I from Sinorhizobium meliloti 1021

 Score =  528 bits (1359), Expect = e-154
 Identities = 302/638 (47%), Positives = 409/638 (64%), Gaps = 35/638 (5%)

Query: 309  ADSDGPHYTTVLTQADFDVWLKKLQNATLFAFDTETTGIDAQQAQLVGLSFAVQ--ANE- 365
            A  D   Y T+      + W+   + A L  FDT+ T  DA +A LVG S AV   AN+ 
Sbjct: 379  APFDHSGYRTIRDIDTLERWIADAREAGLVGFDTQATSPDAMRADLVGFSLAVADYANDP 438

Query: 366  ------AAYIPLTHSYMGVPDQLD----------RDTVLRALKPILEDPSKLKVGQHAKF 409
                  AAY+PL H   GV D L           R+T+ R LK +LEDPS LKVGQ+ K+
Sbjct: 439  SGSRIRAAYVPLAHK-SGVSDLLGGGPVDSQVPGRETLSR-LKELLEDPSVLKVGQNLKY 496

Query: 410  DMNILANCAIGGDQSCGIMVQGIAFDTMLESYVLDSTATRHDMDSLALKYLGYTTTSFQD 469
               ++        +  GI ++    DTML SYVLD+    H MDSLA ++LG+T  +++D
Sbjct: 497  GYLVM--------KRHGIAMRSFD-DTMLMSYVLDAGNGAHGMDSLAERWLGHTPIAYKD 547

Query: 470  IAGKGVKQLTFDQISLELAGPYAAEDADVTLRLHQTLHEKLDAIPSLSKVLSEIEMPLVP 529
            + G G   LTFD + ++ A  YAAEDAD+ LRL   L  +L A   L++V   +E PL+ 
Sbjct: 548  VTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRL-AAKGLTRVYERLERPLIS 606

Query: 530  VLARIERQGALVDANLLGIQSVELGDKLVALEREAFAIAGEEFNLGSPKQLGVILYEKLG 589
            VLA +E +G  VD  +L   S EL     ALE E + +AGE F +GSPKQLG IL+ K+G
Sbjct: 607  VLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGDILFGKMG 666

Query: 590  LPILSKTAKGQASTAEAVLAELAEQDYPLPKVLMQYRSLSKLKSTYTDRLPEQINPRTGR 649
            LP  SKT  GQ ST+  VL +LA   + LP+ ++ +R L+KLKSTYTD LP  ++P T R
Sbjct: 667  LPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFVHPETKR 726

Query: 650  IHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAPKGYKLLAADYSQIELRIM 709
            +HT +  A   TGRLSSSDPNLQNIPIRT EGR+IR AF+A  G+KL++ADYSQIELR++
Sbjct: 727  VHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRVL 786

Query: 710  AHLAKDEGLLHAFRNDLDVHKATAAEVFGVELADVTTDQRRSAKAINFGLIYGMSAFGLA 769
            AH+A    L  AF + +D+H  TA+E+FGV +  + ++ RR AKAINFG+IYG+SAFGLA
Sbjct: 787  AHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYGISAFGLA 846

Query: 770  KQIGVDRKQSQAYIDRYFARYPGVLEYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPA 829
             Q+ ++R ++  YI RYF R+PG+ +YME T+A A E G+VETIFGRR + PDI + NP+
Sbjct: 847  NQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPDIRSSNPS 906

Query: 830  LRKGAERTAINAPMQGTAADIIKKAMVAVDNWLLTSGLDAKVILQVHDELVLEVREDLID 889
            +R   ER +INAP+QG+AADII++AMV ++  L  + L A+++LQVHDEL+ EV +  I+
Sbjct: 907  MRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFEVEDGEIE 966

Query: 890  QVREEIRVHMSSAA----TLDVPLLVEVGVGNNWDEAH 923
            +    I   M +AA     + VPL V+    +NWDEAH
Sbjct: 967  RTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDEAH 1004



 Score =  190 bits (482), Expect = 4e-52
 Identities = 119/289 (41%), Positives = 160/289 (55%), Gaps = 23/289 (7%)

Query: 6   LVLVDGSSYLYRAFHALPPLTT-SKGLPTGAVKGVLNMLKSLRKQYPDSP-------FAV 57
           L LVDGS +++RAFHA+PPL   S GLP  AV G  NML  L     D+         AV
Sbjct: 7   LFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVTPTHLAV 66

Query: 58  VFDAKGGTFRDDLYAEYKANRPSMPDDMRVQIEPLHASVIALGFPLLCVDGVEADDVIGT 117
           +FD    TFR+ LY +YKANR + P+D+  Q   +  +  A   P +  +G EADD+I T
Sbjct: 67  IFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEADDLIAT 126

Query: 118 LARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDVAGVKEKFGVAPEQIIDYL 177
            AR +  A   V I + DKD+ QLV   +++ ++M    + V  V EK+GV PE++ID  
Sbjct: 127 YARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPEKMIDLQ 186

Query: 178 ALMGDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEE- 236
           A+ GDS+DN+PG+PGIGPKTA+ LL        E Y  LD   TL  R  +    K  E 
Sbjct: 187 AMTGDSTDNVPGIPGIGPKTAAQLL--------EEYGDLD---TLLARAGEIKQQKRRES 235

Query: 237 ---HKEMAFLSYQLATIKVDVPLDVGLDDLHLREPDREKLAELYTLLEF 282
              + ++A LS +L T+K D PLDV  +D  L   D  KL      +EF
Sbjct: 236 IIANADLARLSRELVTLKKDTPLDVPPEDFRLDSQDGPKLIAFLKAMEF 284