Pairwise Alignments

Query, 240 a.a., ribonuclease PH from Pseudomonas fluorescens FW300-N2E3

Subject, 708 a.a., 3' exoribonuclease (NCBI) from Rhodospirillum rubrum S1H

 Score = 57.0 bits (136), Expect = 1e-12
 Identities = 57/246 (23%), Positives = 100/246 (40%), Gaps = 25/246 (10%)

Query: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENG----VPRFLKGQGQG 58
           R  GR    +R I I       A GS L   G+T+ + T ++  G    +   L+G+ + 
Sbjct: 315 RIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQALVTTTLGTGQDEQIIDALEGEYRE 374

Query: 59  WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCD 118
                Y   P + GE  +     G  G R +   +L  R++   +        T+ V  +
Sbjct: 375 NFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAIHPMMPAKDAFPYTVRVVSE 430

Query: 119 VIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP----V 174
           + +++G +  A++ G  +AL+DA            G PLK  +A +++G+ + +     +
Sbjct: 431 ITESNGSSSMATVCGTSLALMDA------------GVPLKNAVAGIAMGLIKEDERFAVL 478

Query: 175 LDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNDIFDLQ 234
            D+   ED   + D  V  T+  G   +Q   +      E +N  L  AK G   I    
Sbjct: 479 SDILGDEDHLGDMDFKVAGTA-NGITSLQMDIKITSITKEIMNVALNQAKDGRIHILGEM 537

Query: 235 NAALAD 240
             AL +
Sbjct: 538 TKALGN 543



 Score = 31.6 bits (70), Expect = 4e-05
 Identities = 49/205 (23%), Positives = 71/205 (34%), Gaps = 28/205 (13%)

Query: 18  TRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTAEYGMLPRATGERNQR 77
           T    + A+G+V+   GDT V+CT        +F        LT  Y     A G+    
Sbjct: 22  TGRIARQADGAVMASLGDTTVLCTAVGAKTKSKF----DFFPLTVNYQEKTFAAGKIPGG 77

Query: 78  EASR-GKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQADGGTRTASITGAMV 136
              R G+   +   + RLI R +R         +  L         +      +I GA  
Sbjct: 78  FFKREGRPSEKETLVSRLIDRPIRPLFVHGYKNETQLVCTVLCHDLENNPDIVAIVGASA 137

Query: 137 ALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETDLNVVMTST 196
           AL               G P    I A  VG+  G  V  L+   D  A++ L++V    
Sbjct: 138 ALT------------LSGLPFLGPIGAARVGLIDGAFV--LNPTRDQMADSVLDLV---- 179

Query: 197 GGFIEVQGTAEGAPFQPEELNAMLE 221
                V GT EG      E + + E
Sbjct: 180 -----VAGTREGVLMVESEAHELSE 199