Pairwise Alignments

Query, 296 a.a., spermidine/putrescine ABC transporter permease from Pseudomonas fluorescens FW300-N2E3

Subject, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

 Score =  196 bits (499), Expect = 4e-55
 Identities = 99/250 (39%), Positives = 162/250 (64%), Gaps = 10/250 (4%)

Query: 2   KRFRFSSLMLVLGLLFIYMPMLILVIYSFNASKLVTVWGGWSVKWYVGLLDNTQLMGSVV 61
           +  RFS + LV   LF+Y+P+++L+  SFN +K    WGG++ KWY  L++N  LM +  
Sbjct: 3   RSIRFSFMSLVY--LFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAW 60

Query: 62  RSLEIACYTAVAAVALGTLAAFVLTRVTRFKGRTLFGGLVTAPLVMPEVITGLSLLLLFV 121
            S+ +A ++A AA  +G+L A  L R  +FKG+ +  G++   ++ P+++  +SLL LF+
Sbjct: 61  HSINVAVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFL 119

Query: 122 AMAQMIGWPQERGIVTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFF 181
            M   +G+       T+ IAH TFC  +V V V  RL   D+ + EAA DLGA  W +  
Sbjct: 120 VMGAKLGF------FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILK 173

Query: 182 LITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVA 241
            I +P+  P++AAG ++SF LSLDD++++SFV+GP    LP++++S V++G+ PE+NA+A
Sbjct: 174 KIILPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALA 233

Query: 242 SLILLAVSIV 251
           + ++L VS+V
Sbjct: 234 T-VMLVVSLV 242