Pairwise Alignments

Query, 232 a.a., hypothetical protein from Pseudomonas fluorescens FW300-N2E3

Subject, 217 a.a., outer membrane protein W from Vibrio cholerae E7946 ATCC 55056

 Score =  170 bits (430), Expect = 2e-47
 Identities = 97/225 (43%), Positives = 127/225 (56%), Gaps = 16/225 (7%)

Query: 8   ASLIAFALAPPFAQAHEAGDIIVRAGAITVNPTAGSSSVKVDRGPLAGADLGGKATMDSS 67
           A L A + AP FA  H+ GD IVRAG  +V P   S  V   +  LA         ++S+
Sbjct: 9   AVLAALSSAPVFA--HQEGDFIVRAGIASVVPNDSSDKVLNTQSELA---------VNSN 57

Query: 68  TQLGLNFAYMLTPDIGIELLAASPFQHDVNLKGTSLGAANGKLGTLKHLPPTLSVVYYPL 127
           TQLGL   YM T +I  E+LAA+PF H ++  G  LG+  G +G  KHLPPT  V YY  
Sbjct: 58  TQLGLTLGYMFTDNISFEVLAATPFSHKISTSGGELGSL-GDIGETKHLPPTFMVQYYFG 116

Query: 128 NNKSAFQPYVGAGINYTWIYDEKLSNEAQANGFSNFKTKNSWGLAWQVGADYMLTDHIML 187
              S F+PYVGAG+NYT  +DE  +      G S+ K  +SWGLA  VG DYML D   L
Sbjct: 117 EANSTFRPYVGAGLNYTTFFDESFNGTGTNAGLSDLKLDDSWGLAANVGFDYMLNDSWFL 176

Query: 188 NGQVRYIDIDTTGYVDNNAVAPGTRAKVNIDVDPWIYMVGLGYKF 232
           N  V Y +I+TT      A A  T    +++++PW++M+  GYKF
Sbjct: 177 NASVWYANIETTATYKAGADAKST----DVEINPWVFMIAGGYKF 217