Pairwise Alignments

Query, 232 a.a., hypothetical protein from Pseudomonas fluorescens FW300-N2E3

Subject, 213 a.a., outer membrane protein W (RefSeq) from Shewanella loihica PV-4

 Score =  179 bits (454), Expect = 4e-50
 Identities = 102/233 (43%), Positives = 136/233 (58%), Gaps = 22/233 (9%)

Query: 1   MHKSLLSASLIAFALAPPFA-QAHEAGDIIVRAGAITVNPTAGSSSVKVDRGPLAGADLG 59
           M K+++S  + A  L+  FA  AH+AGDIIVRAG + V P   S  V       AG    
Sbjct: 2   MKKTIVSGLIAAALLSTGFAASAHQAGDIIVRAGGVVVAPNESSEDV-------AGF--- 51

Query: 60  GKATMDSSTQLGLNFAYMLTPDIGIELLAASPFQHDVNLKGTSLGAANGKLGTLKHLPPT 119
           G+  + S+TQLGLNF YMLT +IGIELLAA+PF HDV+LKG       GK+   KHLPPT
Sbjct: 52  GEFNISSNTQLGLNFGYMLTDNIGIELLAATPFSHDVSLKGV------GKIAETKHLPPT 105

Query: 120 LSVVYYPLNNKSAFQPYVGAGINYTWIYDEKLSNEAQANGFSNFKTKNSWGLAWQVGADY 179
           L   YY  +  S  +PY+GAG+N+T  +D + +N+      ++    NSWGLA Q G DY
Sbjct: 106 LVAQYYFGSADSKLRPYIGAGVNFTNFFDSEFTNDLD-GALTDLSLSNSWGLAAQAGIDY 164

Query: 180 MLTDHIMLNGQVRYIDIDTTGYVDNNAVAPGTRAKVNIDVDPWIYMVGLGYKF 232
            +  + ++N  V Y  I+T    D N    G    +  D+DPW+YMV +GY F
Sbjct: 165 QVNKNWLVNASVWYAKINT----DVNFKLAGQAVSIETDIDPWVYMVSVGYTF 213