Pairwise Alignments

Query, 232 a.a., hypothetical protein from Pseudomonas fluorescens FW300-N2E3

Subject, 214 a.a., outer membrane protein OmpW, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  171 bits (434), Expect = 8e-48
 Identities = 99/235 (42%), Positives = 133/235 (56%), Gaps = 24/235 (10%)

Query: 1   MHKSLLSASLIAFALAPPFA---QAHEAGDIIVRAGAITVNPTAGSSSVKVDRGPLAGAD 57
           M+K+ +S  + A  LA  F+    AH+AGDIIVRAGA+ V P   S  V       AG  
Sbjct: 1   MNKTTVSTLIAATLLAAGFSASVSAHQAGDIIVRAGAVVVAPNESSDDV-------AG-- 51

Query: 58  LGGKATMDSSTQLGLNFAYMLTPDIGIELLAASPFQHDVNLKGTSLGAANGKLGTLKHLP 117
             G+  + ++TQLGLNF YMLT + G+ELLAA+PF HDV+L G       GK+   KHLP
Sbjct: 52  -NGEFQISNNTQLGLNFGYMLTDNFGVELLAATPFSHDVSLAGI------GKIAETKHLP 104

Query: 118 PTLSVVYYPLNNKSAFQPYVGAGINYTWIYDEKLSNEAQANGFSNFKTKNSWGLAWQVGA 177
           PTL   YY  N +S  +PYVG G+NYT  +D + +N+      ++     SWGLA QVG 
Sbjct: 105 PTLVAQYYFGNAQSTLRPYVGVGVNYTNFFDNEFTNDLN-GALTDLSMSTSWGLAAQVGL 163

Query: 178 DYMLTDHIMLNGQVRYIDIDTTGYVDNNAVAPGTRAKVNIDVDPWIYMVGLGYKF 232
           DY +  + ++N  V Y  I T    D      G    +  D++PW+YMV +GY F
Sbjct: 164 DYQVNKNWLVNASVWYAQIST----DVEFKLGGKPVTIETDINPWVYMVSVGYTF 214