Pairwise Alignments

Query, 1229 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas fluorescens FW300-N2E3

Subject, 1187 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score = 86.3 bits (212), Expect = 1e-20
 Identities = 173/667 (25%), Positives = 269/667 (40%), Gaps = 120/667 (17%)

Query: 342  VGARFEEEKRRRAEMG---FDDMLLRLDAALRAEGGERLATLIREQFPVAL----IDEFQ 394
            VGA  ++ +RR+  +G   ++D++L   AA R   G+  A  +  +    L    +DE Q
Sbjct: 377  VGAMLKDYQRRKRALGRMDYEDLIL---AARRLLAGDGAAAWVLFKLDGGLDHLLVDEAQ 433

Query: 395  DTDPVQYWI--------FESIYRIEDNNPECGLFLIGDPKQAIYAFRGADIYTYLRARQA 446
            DT P Q+ I        F    R +   P   +F +GD KQ+IY F+GAD   +   R+ 
Sbjct: 434  DTSPDQWAIASALAGEFFTDSARWDGTRPRT-VFAVGDRKQSIYGFQGADPKAFEDMRRH 492

Query: 447  TSGRLHTLG---------TNFRSSHGMVDAVNHVFQRAEAREQGRGAFLFREKNGENPVP 497
                +  +G          +FRS+  +++AVN VF R  AR+         + + ++ V 
Sbjct: 493  FHDAVSDIGGHFAEVPLNISFRSTRAVLEAVNAVFARQPARDG------VAQDDADSGVA 546

Query: 498  FLPVESQGRKES---LQINGQAVPALNIWQLSSEQPLSGV---VYRQQLAAACASEITAL 551
                    RK++   +++     PA  +     + P+  +     R +LA   A  I  +
Sbjct: 547  EDITHHAFRKDAGGLVELWPAMEPAPRVVGDPWKPPVERIGLESARARLAKRVAQRIKTM 606

Query: 552  LNGGQ----QGRAGFVRGAEDLQGLLPADIAILV--RDGKEAQAV----RNELSVRGVRS 601
             +GG+    QGR            + P DI +LV  R G E + V      ++ V GV  
Sbjct: 607  TSGGELLESQGRP-----------IRPGDILVLVRRRGGFEEELVSALKSAKVEVAGVDR 655

Query: 602  VYLSDKDSVFAAQEAHDLLSWLKACAEPDVERPLRAALASITLNLSLTELERL----NQD 657
            + L+D+ +V       DL++  KA   P+ +  L + L    + L    L  L     +D
Sbjct: 656  MTLTDQLAVM------DLIALGKALLLPEDDLTLASVLKGPLIGLDEDALFTLARDRGRD 709

Query: 658  ELAWEKRVMQFREYRVIWRSQGILPMLR----RLL-HDFELPQALIARSDGERILTNLL- 711
            E  W++            ++  I+  LR    RL  H+F     L    +G R+L   L 
Sbjct: 710  ERLWDRLRPHAGAENAYGKAMEIIEPLRDRAGRLAPHEF-YAHVLDGPLNGRRLLLGRLG 768

Query: 712  -----HLSELLQQAAA-ELDGEQALIRHLSEHLALSGQAGEEQILRLESDE---QLVKVV 762
                  + E L    A E  G  AL   LS       + G  +I R + D+     V+++
Sbjct: 769  PEAEDPIDEFLALTLAHERVGPPALQGFLSWL-----EKGTVEIKR-DLDQGALDAVRIM 822

Query: 763  TIHKSKGLEYPLVFLPFICSAKPVDGSRLPMHYHDANGQAQITLSPT--------PELIA 814
            T+H SKGL+ P+VFLP    AKP     L          A     P+          +I 
Sbjct: 823  TVHGSKGLQAPVVFLPDTL-AKPTGNDLLLWTADKGVADALPFWCPSKADRGAAIEAMID 881

Query: 815  LADDERLAEDLRLLYVALTRAQHACWL-GVTDLKRGNNNS--SVLHLSALGYLLGGGEKL 871
                ER  E  RLLYVA+TRA    ++ G   LKR   +   +++H +           L
Sbjct: 882  ALKVERDREYRRLLYVAMTRAADRLYICGWETLKRPAEDCWYALIHDALAASAQTVEVPL 941

Query: 872  VESTALKRWLEDLQQNC-------------SALSYGEMPEATTERFLPPRNEATLLAPLI 918
            +++T   +  E L+  C              A   GE P A     LPP  E T   PL 
Sbjct: 942  LDATGALKDTEVLRLTCPQEGSPSPSDSAAPADEEGEAPAAWAA--LPPPLEPTPSRPLA 999

Query: 919  PKRKAAE 925
            P     E
Sbjct: 1000 PSHVGDE 1006



 Score = 51.6 bits (122), Expect = 4e-10
 Identities = 55/151 (36%), Positives = 73/151 (48%), Gaps = 20/151 (13%)

Query: 3   AKVPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGDESAGFGRELLPPQ-ILVV 61
           AK     A PL  S  + ASAGTGKT  ++   LRL+L      AG      PPQ +L +
Sbjct: 21  AKPQRRAADPL-ASAWVAASAGTGKTKVLTDRVLRLLL------AG-----TPPQRLLCL 68

Query: 62  TFTDAATKELRERIRTRLAEAARFFRDETPAP-DSLIAEL-RGQFSPEQWSGCANRLDIA 119
           TFT AA  E+  R+   LA  A    +       SL+  L  G+ + E  SG A RL   
Sbjct: 69  TFTKAAAAEMANRVSAVLAGWATLPEEALRGRLASLLGSLPEGEEAIEALSGRARRL--F 126

Query: 120 AQWMD---EAAVSTIHSWCQRMLREHAFDSG 147
           AQ +D      + TIH +CQ +LR    ++G
Sbjct: 127 AQVLDCPGGLRIQTIHGFCQTLLRRFPLEAG 157