Pairwise Alignments

Query, 1229 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas fluorescens FW300-N2E3

Subject, 1223 a.a., exodeoxyribonuclease V, beta subunit (RefSeq) from Shewanella loihica PV-4

 Score =  615 bits (1585), Expect = e-180
 Identities = 454/1252 (36%), Positives = 647/1252 (51%), Gaps = 97/1252 (7%)

Query: 9    LAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGDESAGFGRELLPPQILVVTFTDAAT 68
            L+ PL G++LIEASAGTGKT+TI+ LY+RL+LG    +      L   QILVVTFT+AAT
Sbjct: 9    LSLPLSGTRLIEASAGTGKTYTIAGLYVRLLLGDSQRAP-----LSCEQILVVTFTNAAT 63

Query: 69   KELRERIRTRLAEAARFFRDETPAPDSLIAELRGQFSPEQWSGCANRLDIAAQWMDEAAV 128
            +ELR+RIR ++  A R F       D LI  L  +  PE  S    RLD+A + +DEAA+
Sbjct: 64   QELRDRIRKKIQLAYRAFLG-MEVDDPLINTLYSEAEPEARSQALKRLDLALKSLDEAAI 122

Query: 129  STIHSWCQRMLREHAFDSGSLFTQTLEVDHSNLLGEVLRDYWRLFCYPMQGDALNWVRSH 188
             TIH +CQR+L + AF+S  LF     +D S  L   +RD+WR  CYP+ G     + + 
Sbjct: 123  FTIHGFCQRILSDMAFESSLLFESEFTLDDSEYLHHAVRDFWREACYPLPGYLAQIISNK 182

Query: 189  WGGPAALLSRVRGLFASERDSAEGKEPAELITECLQARRDALLELKAPWRQWAQELREIC 248
            +  P  L  ++R L  + + S       E  ++  +    +L  L+  W +      E+ 
Sbjct: 183  FSDPDGLTKQLRPLLGANQASVS--PTPEAFSQVAERLSQSLSRLRLIWPRERDATLELL 240

Query: 249  LQGVASKSVDGRKMQAR-YFEPWFEKICTWAEDDGLEQLDIGTGFNRLTPDGMAEAWKGQ 307
                 + +  G+K Q     E  F  +  WA       L        L   G+     G+
Sbjct: 241  KALPLNGTRFGKKDQGYPKLETLFAAMDNWAAQP--LSLPDNKVLGALALGGLKLNKGGE 298

Query: 308  APSHPGLDAMSGLKASLDALPTPDAAVLKHAAQWVGARFEEEKRRRAEMGFDDMLLRLDA 367
            +P+      ++ ++   + + T   + L  A   + ARF  +K+ +     DD+L+ L  
Sbjct: 299  SPTPEQAPLLAHIERVTETIDTLVPSFLYGARDGIKARFAAQKQLKNLRTPDDLLIALAD 358

Query: 368  ALRAEGGER--LATLIREQFPVALIDEFQDTDPVQYWIFESIYRIED--NNPECGLFLIG 423
            AL  E  +   LA  I ++FP+ALIDEFQDTDP+QY IF SIY+ +    + + GL +IG
Sbjct: 359  ALSEETDQEQALARAIAKRFPIALIDEFQDTDPLQYQIFSSIYQGQQVSTDSDLGLLMIG 418

Query: 424  DPKQAIYAFRGADIYTYLRARQATSGRLHTLGTNFRSSHGMVDAVNHVFQRAEAREQGRG 483
            DPKQAIYAFRGADI+TY+ AR  T    ++L TN+RSS  M++AVN +F R++       
Sbjct: 419  DPKQAIYAFRGADIHTYIHARGQTENH-YSLDTNYRSSQAMIEAVNQLFSRSD------D 471

Query: 484  AFLFREKNGENPVPFLPVES--QGRKESLQINGQAVPALNIWQLSSEQPLSGV---VYRQ 538
             F+         +PF  V++  +  ++ L        AL + +L  E P +G+     R 
Sbjct: 472  PFI------SQAIPFELVKASPEAAEKRLVEKVPQTSALRL-KLLGEDPNAGLNKASARS 524

Query: 539  QLAAACASEITALLNGGQQGRAGFVRGAEDLQGLLPADIAILVRDGKEAQAVRNELSVRG 598
            QLA   A+EI  LLN  Q+G        +  + L   DIA+LVRD  EA  ++  LS RG
Sbjct: 525  QLAEDAANEIARLLNEAQRGEC-----LKQDKPLKAKDIAVLVRDRNEAAYIKTALSSRG 579

Query: 599  VRSVYLSDKDSVFAAQEAHDLLSWLKACAEPDVERPLRAALASITLNLSLTELERLNQDE 658
            + +V+LS +DSVF    A +L   L A A P  ER LR+A+A+  L      +   N DE
Sbjct: 580  IGAVFLS-RDSVFDTLVAKELALVLLAIANPKDERALRSAMATALLGYDAQAIHGFNLDE 638

Query: 659  LAWEKRVMQFREYRVIWRSQGILPMLRRLLHDFELPQALIARSDGERILTNLLHLSELLQ 718
               ++++  F      W  +GI+P +  L  D  L + L+   +G+R LT+  HL ELLQ
Sbjct: 639  DVRQQQLEAFDNLHQTWLKRGIMPCMMALAADTRLIERLLTADEGQRRLTDFRHLGELLQ 698

Query: 719  QAAAELDGEQALIRHLSEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLP 778
            Q A ELDG  AL+    + L +   + EE  LRLES++ LV++VTIHKSKGLEYP+ FLP
Sbjct: 699  QKAMELDGISALLNWYQQTL-IEVSSTEEAQLRLESEQNLVQIVTIHKSKGLEYPICFLP 757

Query: 779  FICSAKPVDGSRLPMHYHDANGQAQITLSPTPELIALADDERLAEDLRLLYVALTRAQHA 838
            F+  A+       PM YH+ +      +  + E  A    E LAEDLRLLYVALTR   A
Sbjct: 758  FVSLARDSRRKPAPMLYHEQDALVW-DIDQSEEGWAKYKAENLAEDLRLLYVALTRPVLA 816

Query: 839  CWLGVTDLKRGNNN---SSVLHLSALGYLLGGGEKLVESTALKRWLEDLQQNCSALSYGE 895
            C+  V +  R       SS L  +A+GYLLG     +E+ A +    D+Q    AL+   
Sbjct: 817  CYCYVANHSRFTKRDGISSQLFETAIGYLLG-----IETNACE--FADIQAAAQALASEA 869

Query: 896  MPEATTERFLPPRN-------EATLLAPLIPKRKAAENWWIASYSALRIGDSLSAGSDEA 948
            +     E   P  +       +A  LAP    R+    W + SYS L     +   + E 
Sbjct: 870  ISVDLVESDAPKLDFDPIDTADAVKLAPRPLNRRHEIPWRVGSYSGL-----VKHSAHEQ 924

Query: 949  PESPQAQKLFDD-ERLDPDAPREVLASGGDIHRFPRGPNPGTFLHGLLEWAGDEGFAADP 1007
                   + F + E+L PD+ +    S      F RG N G+FLH +LE      F    
Sbjct: 925  ISPGMGDEAFPELEQLAPDSEQLSRFS------FERGANAGSFLHWVLEQID---FTLAD 975

Query: 1008 KSIENAIARRCNRRGWEG-WINTLSDWLQHLLQAPLRIGTEQPPVVFEQLTEYR--VEME 1064
             S+ + + +   R G +  W + L  W   LL  PL    +   +    L++ +  VEME
Sbjct: 976  TSLGDELPKAMERFGIDSEWQDMLHAWYLDLLHTPL----DGDGLRLASLSQAQKLVEME 1031

Query: 1065 FWFASHKVDVLKLDELVRQYTHAGASRVVAEPVLLNGMFKGFIDLTFEHAGRYYVADYKS 1124
            F+    K+D   L++L+ QY ++ A         L GM KGFIDLTFE+ G++Y+ADYKS
Sbjct: 1032 FYMPIGKLDAPGLNQLLSQYGYSAALNFET----LEGMLKGFIDLTFEYQGKFYIADYKS 1087

Query: 1125 NWLGADDSAYTEQAMEQSMLDHRYDLQYVLYLLALHRQLKARLADYDYDRHMGGALYLFL 1184
            N LG   S Y + AM +++  H YDLQY++Y LALHR LK RL  Y YD+H+GG  YLFL
Sbjct: 1088 NHLGDHLSHYEKPAMLRAIAGHHYDLQYIIYSLALHRYLKLRLPGYQYDQHVGGCYYLFL 1147

Query: 1185 RGTRA--PGQGVYFTRPPRELIERLDRLF----------QGKPEPKPEPAWE 1224
            RG  A  P  GVY+ +PP  LI+ LD L           + K E + EP  E
Sbjct: 1148 RGMSADSPSTGVYYDKPPLALIQALDTLLSEAEASESQAESKAESQAEPQAE 1199