Pairwise Alignments

Query, 1229 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas fluorescens FW300-N2E3

Subject, 771 a.a., Probable ATP-dependent DNA helicase II UvrD1 from Mycobacterium tuberculosis H37Rv

 Score = 65.5 bits (158), Expect = 2e-14
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 329 TPDAAVLKHAAQWVGARFEEEKRRRAEMGFDDMLLRLDAALRAEGGERLATLIREQFPVA 388
           T D+  L  A   V   ++   R    + FDD++    A L+A    ++A   R +F   
Sbjct: 178 TEDSDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAF--PQIAQYYRRRFRHV 235

Query: 389 LIDEFQDTDPVQYWIFESIYRIEDNN--PECGLFLIGDPKQAIYAFRGADIYTYLR-ARQ 445
           L+DE+QDT+  QY +   +   + N+  P   L ++GD  Q+IYAFRGA I       R 
Sbjct: 236 LVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERD 295

Query: 446 ATSGRLHTLGTNFRSSHGMVDAVNHVFQRAEAREQGR 482
               R   L  N+RS+  ++ A N V  R   R + R
Sbjct: 296 YPDTRTILLEQNYRSTQNILSAANSVIARNAGRREKR 332



 Score = 39.7 bits (91), Expect = 1e-06
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 18 LIEASAGTGKTFTISALYLRLVLGHGDESAGFGRELLPPQILVVTFTDAATKELRERIRT 77
          LI A AG+GKT  ++     L+   G    G G      QIL +TFT+ A  E+RER+  
Sbjct: 39 LIVAGAGSGKTAVLTRRIAYLMAARG---VGVG------QILAITFTNKAAAEMRERVVG 89

Query: 78 RLAEAARF 85
           + E AR+
Sbjct: 90 LVGEKARY 97



 Score = 37.0 bits (84), Expect = 6e-06
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 35/163 (21%)

Query: 685 RRLLHDFELPQALIARSDGERILTNLLHLSELLQQAAAELDGEQ------ALIRHLSEHL 738
           RR L     PQ L AR D    L ++ H     ++ AA L  +        ++    E +
Sbjct: 518 RRELEASTDPQEL-ARLDNLNELVSVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERV 576

Query: 739 ALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFICSAKPVDGSRLPMHYHDA 798
           +L   A E      E    +V ++T+H +KGLE+P+VF         V G    M     
Sbjct: 577 SLVADADEIP----EHGAGVVTLMTLHTAKGLEFPVVF---------VTGWEDGMF---- 619

Query: 799 NGQAQITLSPTPELIALADDERLAEDLRLLYVALTRAQHACWL 841
                      P + AL +   L+E+ RL YV +TRA+   ++
Sbjct: 620 -----------PHMRALDNPTELSEERRLAYVGITRARQRLYV 651



 Score = 32.0 bits (71), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 532 SGVVYRQQLAAACASEITALLNGGQQGRAGFVRGAEDLQGLLPADIAILVRDGKEAQAVR 591
           +GV +   L AA   ++  L    ++  AGFV   ++L+G L  D+  LV    E    R
Sbjct: 459 TGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYR 518

Query: 592 NEL 594
            EL
Sbjct: 519 REL 521