Pairwise Alignments

Query, 340 a.a., 23S rRNA methyltransferase from Pseudomonas fluorescens FW300-N2E3

Subject, 362 a.a., ribosomal RNA large subunit methyltransferase F from Vibrio cholerae E7946 ATCC 55056

 Score =  318 bits (814), Expect = 2e-91
 Identities = 159/343 (46%), Positives = 223/343 (65%), Gaps = 16/343 (4%)

Query: 4   PRTPRPARQKPKPATP-AKAVEPRE----KASLHPRNRHQGRYDFPALIKTTPELAKFVI 58
           P+  +P  +K +   P    V+  E    K+ LHPRNRH+G+YDFPALIK  PEL   V+
Sbjct: 17  PKANKPVVKKQQTKQPPTHKVQGEEVAAVKSGLHPRNRHRGQYDFPALIKVVPELQSHVM 76

Query: 59  INPYGKESIDFASPDAVRVFNRALLKSFYGIAHWDIPADYLCPPVPGRADYVHFLADLLA 118
            NP G+ +I+FA P +V++ N+ALL   YG+ +WDIP  +LCPP+PGRADY+H +ADLL 
Sbjct: 77  KNPKGQWTINFADPISVKLLNKALLVLHYGVTYWDIPEGFLCPPIPGRADYIHRVADLLL 136

Query: 119 SVNDGEIPRGAPVKVLDIGMGANCVYPLIGYSDYRWHFLGSEIDPTAVAAAKAIVQSNG- 177
             N       + V+ LDIG+GANC+YP++G ++Y W ++GS++DP ++  A  IVQSN  
Sbjct: 137 KGNPQ--LNHSQVRALDIGVGANCIYPIVGVTEYGWSWVGSDVDPVSIQQASLIVQSNSK 194

Query: 178 LNKAIQLRQQSNPKHILLGLLEPGERFDLTMCNPPFHASMDEATKGSERK-------WRA 230
           L   I+ R Q N +HI  G++   ER+ +T CNPPFHAS+ +A +G++RK        R 
Sbjct: 195 LQGHIECRLQKNSQHIFNGIIGANERYTVTTCNPPFHASLADAQQGTQRKLTNLQANQRK 254

Query: 231 LGR-ADPKRKLPVLNFGGQSAELWCEGGEARFVTQLIAESAHFQHKVLWFSTLVSKASNL 289
            GR A P      LNFGGQ AELWC GGEA F+ ++  ES  F  +VLWF TL+SK  N+
Sbjct: 255 KGRLATPTLSHSRLNFGGQKAELWCPGGEAAFIGKMAVESQQFAQQVLWFRTLISKGDNV 314

Query: 290 PAIQTALKKAGVLESQVVEMSQGQKQSRFVAWTFQTKSEQQVW 332
             ++  L+K G     V+EM+QGQK SRF+AW+FQ   ++++W
Sbjct: 315 RGMKKQLEKLGAQSIHVIEMAQGQKISRFIAWSFQNAEQRKLW 357