Pairwise Alignments

Query, 372 a.a., LPS export ABC transporter permease LptF from Pseudomonas fluorescens FW300-N2E3

Subject, 370 a.a., permease YjgP/YjgQ family protein (RefSeq) from Shewanella loihica PV-4

 Score =  221 bits (563), Expect = 2e-62
 Identities = 127/351 (36%), Positives = 194/351 (55%), Gaps = 2/351 (0%)

Query: 1   LIVFRYLSREVLLTLSAVSAVLLVIIMSGRFIKFLAQAASGALDPGSLFLIMGFRLPGFL 60
           +IVFRYL REVL    AV  VLL I +S  F++ LA A+ G      +  ++G  LP   
Sbjct: 1   MIVFRYLIREVLKAQMAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNLPYLA 60

Query: 61  QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTLFPAALVAVIVAWLSLSL 120
            L++PL LFLGIL+A+GR+Y ESEM V  + G+S+  +  +TL  A    +   +L + +
Sbjct: 61  VLVVPLSLFLGILVAHGRMYAESEMVVFHSVGVSEWYVTRVTLLLAVANMLFTGFLVIYV 120

Query: 121 APQGANQFQLLLNKQDAMTEFDTLVPGRFQALRDGSRVTYTEQLSDDRINLGGVFISEKR 180
            P        +L    +      L  GRFQ   +G  V + E++  D   L  VF+++  
Sbjct: 121 TPWAEETQNRVLENAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDN-QLDKVFVAQLP 179

Query: 181 LSADQKDRGISVLVAEKGRQEIKEDGNRYLILDNGYRYDGQPGLADYRAIKYDTYGVLLP 240
              D   +  +++VA+ G     E G + L L++G +Y  +    DY+ +++  Y + + 
Sbjct: 180 DPEDGASQS-NIVVAQGGSVIEDESGEQRLKLNDGIQYQSKQNQLDYQVVQFAGYEMQIK 238

Query: 241 KPDVSDEVTDRDAMPTRTLLDNPDIRARAELEWRVSLPLLVFIVTLMAVPLSRVNPRQGR 300
           + +V        A+P   LLD     A AE  WR+++PL +  +TL+AVP++RVN RQG+
Sbjct: 239 EQEVDQRRRKLSALPIDQLLDTEGPEAVAEFHWRLAIPLAIPFMTLIAVPMARVNVRQGK 298

Query: 301 FLKLLPAILLYMAYLTILIAARGALEKGKIPPALGLWWVHAIFLAIGLGLL 351
           F K+ PAILLY+ Y  ++IA R ALE   IP  LG+WW+HA  L +G+ LL
Sbjct: 299 FAKMFPAILLYLGYFGLMIAGRKALEDEVIPAYLGMWWIHASALFLGMLLL 349