Pairwise Alignments

Query, 486 a.a., murein transglycosylase from Pseudomonas fluorescens FW300-N2E3

Subject, 462 a.a., transglycosylase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  171 bits (434), Expect = 4e-47
 Identities = 141/461 (30%), Positives = 228/461 (49%), Gaps = 31/461 (6%)

Query: 12  AKWLIATGLFLMLS----GCVDKPNT--------LERVKEDGVLRVVTRNSPATYFQDRN 59
           AK LI   LFL+L     GC +K +T        L ++K+ G L V+T  S  +YF  R 
Sbjct: 3   AKTLILP-LFLILLCCVFGCRNKHHTEKNETAHDLPQIKDSGELVVLTLYSSTSYFIYRG 61

Query: 60  GETGFEYELVKRFADDLGVKLKIETADNLDDLYGQLGKPGGPVLAAAGLVGSDKRKQQVR 119
            E GF+YEL ++FA  LG+KL+IE A N+ +L  +L    G ++ A  L  + + K  + 
Sbjct: 62  QEMGFQYELSEQFAKSLGLKLRIEVARNVRELIQKLQSGEGDMI-AYNLPITKEWKDSLL 120

Query: 120 FSHSYLEVTPQIIYR--NGQSRP-TSAADLVGKTIMVLKGSTHADQLAALKKKYPG---I 173
           +    + +T Q+I +  NG+ +P     +L+GK I V  G  + D+L  L  +  G   I
Sbjct: 121 YCGEDI-ITHQVIVQQGNGKHKPLKDVTELIGKDIYVKPGK-YYDRLVNLNNELGGGIHI 178

Query: 174 EYEESDAVEVVDLLRMVDEGQIDLTLVDSNEVAMNQVYFTNARVAFDLGDASNQSWAVAA 233
                D+V   DL+  V +G+I  T+ D++   +N+ Y+ N  +   +      SWAV  
Sbjct: 179 HKITGDSVTAEDLITQVAQGKIPYTVADNDLAKLNKTYYPNLNIDLSISFDQRSSWAVRK 238

Query: 234 GDDNSLLNEINDFLDKAQKNGTLQRLKDRYYGHVDVLGYMGAYTFAEHLQQRLPKYEKHF 293
            D   L     ++  +   +        RY+ +  ++ +    +  E    ++  Y+  F
Sbjct: 239 -DSPELAAAATNWHKENMTSPAYTASMKRYFENSKMMPHSPILSLKE---GKISHYDDLF 294

Query: 294 KASAKEEKVDWRLLAAIGYQESLWQPAVTSKTGVRGLMMLTQNTAQAMGV--SNRLDAKQ 351
           K  A+E   DWR+LA++ Y ES +     S  G +GLM L   TA+AMGV      + ++
Sbjct: 295 KKYAQEIGWDWRMLASLAYTESNFDTTAVSWAGAKGLMQLMPATARAMGVPAGKEQNPEE 354

Query: 352 SIMGGAKYLAYTKDQLDDSIQEPDRTWFALAAYNVGSGHLDDARKLAAKEGLNPDKWLD- 410
           SI    KY+A T    +    + +R  F LA+YN G GH+ DA  LA K G N   W D 
Sbjct: 355 SIKAAVKYIAATDRSFNMIPDKQERLNFILASYNAGLGHIYDAMALAKKYGKNNLVWKDN 414

Query: 411 VKKILPRLSQKQWYSK--TRYGYARGGEPVHFVANIRRYYD 449
           V+  +   S +++++    + GY RG E  +FV +I+  ++
Sbjct: 415 VENFILLKSNEEYFTDPVCKNGYFRGIETFNFVRDIQSRFE 455