Pairwise Alignments

Query, 571 a.a., N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) from Pseudomonas fluorescens FW300-N2E3

Subject, 678 a.a., PTS transporter subunit EIIC from Rahnella sp. WP5

 Score =  339 bits (869), Expect = 2e-97
 Identities = 204/527 (38%), Positives = 296/527 (56%), Gaps = 66/527 (12%)

Query: 9   LQRLGRALMLPIAILPIAGLLLRLG--------DTDLLNIAIIHDAGQVIFANLALIFAI 60
           LQ++GRALM+P+A LP A +L+ +G          D    A    +G  I  N++++FAI
Sbjct: 7   LQKIGRALMVPVATLPAAAILMGVGYWIDPVGWGGDNALAAFFIKSGSAIIENMSVLFAI 66

Query: 61  GIAVGFARDNNGTAGLAGAIGYLVMVSTLKVLDASINM-----------------GMLAG 103
           G+A G ++D +G A L G +G+LV+ +      A+++M                     G
Sbjct: 67  GVAYGMSKDKDGAAALTGFVGFLVLTTLCS--PAAVSMIQKIPLDQVPAAFGKINNQFVG 124

Query: 104 IISGLMAGALYNRFKDIKLPEYLAFFGGRRFVPIATGFSAVGLGVIFGLIWPPIQHGINS 163
           I+ G+++  LYNRF  ++LP+ L+FF GRR VPI T F  + +  I   +WP I +G+ +
Sbjct: 125 ILVGIISAELYNRFSHVELPKALSFFSGRRLVPILTSFLMIIVAFILMYVWPLIFNGLVT 184

Query: 164 FGQLLLESGSIGAFVFGVFNRLLIVTGLHHILNNMAWFIFGSFTDPT----------TGA 213
           FG+ + + GS GA ++  FNRLLI  GLHH LN++ WF      D            +G 
Sbjct: 185 FGEHIQQLGSAGAGIYAFFNRLLIPVGLHHALNSVFWFDVAGINDIPNFLGGQESIQSGK 244

Query: 214 IVTGDLARYFAGDPKGGQFMTGMFPMMIFGLPAACLAMYRNALPERRKVMGGIFLSMALT 273
            V G   RY AG           FP+M+FGLP A LA+Y  A PE +  + GI L+ A  
Sbjct: 245 AVVGITGRYQAG----------FFPIMMFGLPGAALAIYHCARPENKAKVAGIMLAAAFA 294

Query: 274 SFLTGVTEPIEFAFMFLAPLLYLLHVLLTGMAMAITNALNIHLGFTFSGGAIDMALGWGK 333
           SF TG+TEP+EF+FMF+AP+LY++H +LTG+++ I  +++   GF FS G +DM L    
Sbjct: 295 SFFTGITEPLEFSFMFVAPVLYVIHAVLTGISVFIAASMHWIAGFGFSAGLVDMVLSSRN 354

Query: 334 --STNGWLVFPVGLAYAVIYYVVFDFCIRRFNLKTPGREGVVVGEKV------VLSENQR 385
             +T+ +++ P GL + VIYYVVF F I++FNL TPGRE  V G++       V S   +
Sbjct: 355 PLATHWYMLIPQGLVFFVIYYVVFRFTIQKFNLLTPGRELAVAGDEADGYDVDVESAGNK 414

Query: 386 -------AGAYIQALGGAENLITVGACTTRLRLEMVDRNKASDSELKALGAMAVVRPGKG 438
                  A  YI A+GG+ENL  + AC TRLRL + D    +D   K LGA  V+R  K 
Sbjct: 415 GDETVALARRYISAIGGSENLTGIDACITRLRLNVKDSALVNDGLAKRLGASGVIRLNK- 473

Query: 439 GSLQVVVGPLADSIADEIRQAM---PTAGSALVAAVVVTEEAPKAAP 482
            S+QV+VG  A+ IA  +R A+   P A + +  A  V+E  P+A P
Sbjct: 474 QSVQVIVGTRAEIIAGAMRTALNAGPIAAATVTPAAPVSEIKPQAVP 520



 Score = 45.4 bits (106), Expect = 7e-09
 Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 488 AQKWLNAVGGSDNVLQLDCVAMTRIRLQLADGKALSECQLKDLGCQGVSALDGGVWHLLI 547
           A+++++A+GGS+N+  +D   +TR+RL + D   +++   K LG  GV  L+     +++
Sbjct: 422 ARRYISAIGGSENLTGIDA-CITRLRLNVKDSALVNDGLAKRLGASGVIRLNKQSVQVIV 480

Query: 548 GDKALSLSEALEGLVNRSEVSA 569
           G +A  ++ A+   +N   ++A
Sbjct: 481 GTRAEIIAGAMRTALNAGPIAA 502