Pairwise Alignments

Query, 298 a.a., recombinase XerD from Pseudomonas fluorescens FW300-N2E3

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score =  357 bits (917), Expect = e-103
 Identities = 181/294 (61%), Positives = 223/294 (75%), Gaps = 1/294 (0%)

Query: 5   DHPLIDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQEKGLELLNAGRELILDHLSWRL 64
           D  L++QFLD +W E+GL++NT  +YR+DL+    W+ +    L       + ++ SW  
Sbjct: 8   DQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLS 67

Query: 65  EQNYKPRSTARFLSGVRGFYRYLLREKLIAVDPTLRVDMPQLGRPLPKSLSEADVEALLA 124
           EQNYKP S AR LS +R  ++YL REK+ A DP+  +  P+L   LPK LSEA VEALL+
Sbjct: 68  EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLS 127

Query: 125 APDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQINLRQGVLRVMGKGSKERLVPMGE 184
           APD    +  RD+AMLE+LYA GLRVTEL+SLT+E ++LRQGV+RVMGKG KERLVPMGE
Sbjct: 128 APDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGE 187

Query: 185 EAIVWVERYLRDGRSELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIG-KSLSP 243
            AI W+E +L+ GRS LLG + SD++FPS RG+QMTRQTFWHRIKH A +AGI  + LSP
Sbjct: 188 NAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSP 247

Query: 244 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPR 297
           H LRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVA  RL+ LH +HHPR
Sbjct: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPR 301