Pairwise Alignments

Query, 298 a.a., recombinase XerD from Pseudomonas fluorescens FW300-N2E3

Subject, 328 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score =  204 bits (520), Expect = 2e-57
 Identities = 130/295 (44%), Positives = 173/295 (58%), Gaps = 8/295 (2%)

Query: 10  DQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQEKGLELLNAGRELILDHLSWRLEQNYK 69
           + FL+ +  E+G +  T +AY  DL  +  +L+EKGL+ L   R  +  +L+        
Sbjct: 23  EAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAAAGLA 82

Query: 70  PRSTARFLSGVRGFYRYLLREKLIAVDPTLRVDMPQLGRPLPKSLSEADVEALLAAPDLS 129
           PRS AR LS +R F+ +L+ E     DPT+ +D P+LGRPLP+ LSEA+V+ALL A +  
Sbjct: 83  PRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAAEAG 142

Query: 130 E-AIGQRDRAMLEVLYACGLRVTELISLTLEQINLRQGVLRVMGKGSKERLVPMGEEAIV 188
           E A G R R +LE+LY+ GLRV+EL+SL L   N     + V GKG KERLVP+G  A  
Sbjct: 143 EGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPETILVRGKGDKERLVPLGLPARA 202

Query: 189 WVERYLRDGRSELLGG-----RPSDVLFPSLRGE-QMTRQTFWHRIKHQAKVAGIGKS-L 241
            +  +L    + L        R    LFPS   E  +TR  F   +   A  AGI  + +
Sbjct: 203 ALRDWLIARPTTLPASGAARRRADRFLFPSSAAEGHLTRDGFAKMLGELALRAGIDPARV 262

Query: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHP 296
           SPH LRH FA+H+L HGADLR VQ LLGH+D++TTQIYTHV   RL  L    HP
Sbjct: 263 SPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHP 317