Pairwise Alignments

Query, 293 a.a., LysR family transcriptional regulator from Pseudomonas fluorescens FW300-N2E3

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  175 bits (444), Expect = 1e-48
 Identities = 106/289 (36%), Positives = 153/289 (52%), Gaps = 5/289 (1%)

Query: 2   KRLPPLPALHTFLITAQCCNFTRAAEQLHITQGAVSRQIAGLEEHLGYTLFHRQARGLSL 61
           +RLPPL A+  F   A+  +FTRAAE+L +TQ AVS QI  LEE+LG  LF R+ R L L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLL 62

Query: 62  TAEGLEWLPRIQQVFGLIDEAVEQVGAHRETLQL---KAPTCVMRWLLPRLLQWQKERPD 118
           T EG  +   I+ +F  + +A +++ A      L    +P+  ++WL+PRL  + +  PD
Sbjct: 63  TEEGQGYFLDIKDIFVQLADATDRLLARSAIGSLTVSTSPSFAIQWLVPRLANFSENNPD 122

Query: 119 VPVELTTTVQHGVDFHREQFDAAVMYGAPPDSSLASLHLFDEQLTPVCSQPLLDGPVPLH 178
           + V +   V        +  D A+ YG      L +  L +E L PVCS  LL GP PL 
Sbjct: 123 IDVRI-KAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGPKPLS 181

Query: 179 SPSDLSQHLLLHPTRDQRDWKAWLKAADVNLNTLGKGQHFETLDLAMSVASQGTGVAIGD 238
            PSDL  H LLH +  + DW+AW +   +N   + +G  F    L +  A+ G GVA+G 
Sbjct: 182 QPSDLKHHTLLHDS-SRHDWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 239 WSLIGDDLSAGRLVMPFDLKVKTGLGYYLVFPQKPGPSPQLRELMEWLV 287
             L   D+ AGRLV PF   + +   YYLV  Q      ++    +W++
Sbjct: 241 SVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWML 289