Pairwise Alignments

Query, 293 a.a., LysR family transcriptional regulator from Pseudomonas fluorescens FW300-N2E3

Subject, 303 a.a., glycine cleavage system transcriptional activator, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  169 bits (427), Expect = 9e-47
 Identities = 103/289 (35%), Positives = 152/289 (52%), Gaps = 5/289 (1%)

Query: 2   KRLPPLPALHTFLITAQCCNFTRAAEQLHITQGAVSRQIAGLEEHLGYTLFHRQARGLSL 61
           +RLPPL A+  F   A+  +FTRAAE+L +TQ AVS QI  LE+ LG  LF R+ R L L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLL 62

Query: 62  TAEGLEWLPRIQQVFGLIDEAVEQVGAHRETLQL---KAPTCVMRWLLPRLLQWQKERPD 118
           T EG  +   I+ +F  + +A +++ A      L    +P+  ++WL+PRL ++ ++ P+
Sbjct: 63  TEEGQSYFLDIKDIFIQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKNPE 122

Query: 119 VPVELTTTVQHGVDFHREQFDAAVMYGAPPDSSLASLHLFDEQLTPVCSQPLLDGPVPLH 178
           + V +   V        +  D A+ YG      L +  L +E L PVCS  LL+GP PL 
Sbjct: 123 IDVRI-KAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPLS 181

Query: 179 SPSDLSQHLLLHPTRDQRDWKAWLKAADVNLNTLGKGQHFETLDLAMSVASQGTGVAIGD 238
            P DL  H LLH    + DW+AW +   +    + +G  F    L +  A+ G GVA+G 
Sbjct: 182 KPEDLKHHTLLH-DMSRHDWQAWFRQCGITDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 239 WSLIGDDLSAGRLVMPFDLKVKTGLGYYLVFPQKPGPSPQLRELMEWLV 287
             L   D+ AGRLV PF   + +   YYLV  Q      ++    EW++
Sbjct: 241 SVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWML 289