Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas fluorescens FW300-N2E3

Subject, 165 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

 Score = 65.5 bits (158), Expect = 4e-16
 Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 12/170 (7%)

Query: 1   VSQSRFNHVFLAQRVSLLRTLERMVNNHSTAEDLLQETYLRVTRALSERAIDHLEPFVFQ 60
           VS     H++ A    L   L R +     A DL Q+T+LR+   L  R+ D  EP    
Sbjct: 4   VSSDPLAHLYRAHHGWLHGWLRRQLGCSHQAADLAQDTFLRL---LGRRSADLGEPRALL 60

Query: 61  T--ARNLALDHLRARRIQSRTMLEDVPLDVVQNIA-APLSSAEDAAHAEQLLERLNISLS 117
           T  A+ L +DH R R +      E   L+V+  +  A   S E      + L R++  L+
Sbjct: 61  THIAKGLVVDHWRRRAV------EQAYLEVLARLPEAQAPSPETRLLVLEALCRVDAMLA 114

Query: 118 QLTPRQQQIFILSRLHGHSYLEIAEQLSVSLSTVQKDLKLIMAICVGVAD 167
            L PR ++IF+LS+L G +Y  IAE+L  SL TV++ ++     C+   +
Sbjct: 115 GLPPRTREIFLLSQLDGLTYGAIAERLGTSLITVKRHMRNGFIACMAALE 164