Pairwise Alignments

Query, 448 a.a., porin from Pseudomonas fluorescens FW300-N2E3

Subject, 422 a.a., Carbohydrate-selective porin from Pseudomonas stutzeri RCH2

 Score =  253 bits (646), Expect = 8e-72
 Identities = 147/431 (34%), Positives = 216/431 (50%), Gaps = 23/431 (5%)

Query: 14  SAVAVLTMAGNVHAADAFSADSKWMTGDWGGERTKLIDQGIDIKADYVGEVGANLHGGYN 73
           S V    +  + HAAD +S D +++ GDW G RT+L + G+D++  YV E+  N  GG +
Sbjct: 9   SGVLAACLFTSAHAAD-YSPD-QFLFGDWNGSRTRLHEAGVDLQITYVNELAWNTQGGDD 66

Query: 74  HDKTARYADQFGLGVALDLQKLWGWDNTQAKIQLTNRNGQNISNDRVGDPRAGTLSSSQE 133
           H  T  Y+DQ     ALDL KL GW     +  + NRNG+N++     +   G L   QE
Sbjct: 67  H--TGTYSDQLMFDAALDLDKLLGWSGAGFRFSVVNRNGENLN----AEADLGVLLQPQE 120

Query: 134 VYGRGHMVRLTQLWVQHQFLDGKLDVKAGYFGEGEDFNTFPCEFQNLAFCGSQAGNWATG 193
           ++G G + RL Q + Q   LD +L VK G      +   F C FQNL FCG+  G + T 
Sbjct: 121 IHGYGSVTRLVQFYYQQALLDDRLLVKLGRLPMSGEIFPFACPFQNLGFCGTVPG-YITP 179

Query: 194 IWYNWPVMQAAVRVKYNITPEFYAQIGAYNQNPSQLEHGNGFKL-SGSGTKGTVLPVELV 252
            W+ WP+ Q     +Y +  E+  Q   Y  NP   E   G    S SGT G     EL 
Sbjct: 180 NWFTWPISQWGATARYQLDAEWSLQTALYQVNPRFTEREQGLNFGSPSGTTGYHAVAELG 239

Query: 253 WSPKVNNLPGEYRVGYYKSTADANDVRKDDNGDDAATTGKAFRSHDSKHGYWFVAQQQLT 312
           W+P  +  PG YR+G +++T D  D+ +D  G   A +G     HD   G + +A+QQL 
Sbjct: 240 WTPTFSGQPGAYRLGLWRNTGDFEDIYRDAAGRPMALSGAPAAEHDKATGGYLMAEQQLW 299

Query: 313 THNGDASRGLNVAANATFHDKDTNVVDNYQSLMFVYKGPFDARPKDDVGIGFARIHVNDD 372
             +  A R L + AN    D D   ++    +  +   PF +RP D++G+G  R+ +NDD
Sbjct: 300 QSSTVAERRLKLFANFIQSDPDVTYIERIWQVGGILSAPFASRPHDELGLGLGRLEINDD 359

Query: 373 VKKNAELVNAANGVSDYDNPLFSPLRSTEYNYEINYGFHVTNWLTVRPNLQYITHPGGVD 432
            +K+  L      V D            EY  E+ Y   +T  +++ PN+QY   PGG D
Sbjct: 360 ARKH--LREQGGQVPD-----------VEYPAELYYRVALTPAISLTPNIQYFHRPGGFD 406

Query: 433 EVDNALVAGLK 443
           + ++ +V GLK
Sbjct: 407 DAEDVVVVGLK 417