Pairwise Alignments

Query, 396 a.a., 3-methylitaconate isomerase from Pseudomonas fluorescens FW300-N2E3

Subject, 389 a.a., putative AcnD-accessory protein PrpF (RefSeq) from Shewanella loihica PV-4

 Score =  567 bits (1460), Expect = e-166
 Identities = 287/387 (74%), Positives = 327/387 (84%), Gaps = 4/387 (1%)

Query: 6   QIKIPATYMRGGTSKGVFFSLQDLPESAQVPGPSRDALLLRVIGSPDPYEKQIDGMGGAT 65
           Q+KIPATYMRGGTSKGVFF+L+DLP +AQ PGP+RDALLLRVIGSPDPY KQ DGMGGAT
Sbjct: 3   QMKIPATYMRGGTSKGVFFALKDLPLNAQQPGPARDALLLRVIGSPDPYGKQTDGMGGAT 62

Query: 66  SSTSKTVIVSKSIKADHDVDYLFGQVSIDKPFVDWSGNCGNLSAAVGSFAISSGLVEASR 125
           SSTSKTVI+ KS + DHDVDYLFGQV+IDKPFVDWSGNCGNL+AAVG+FAI+ GLV++++
Sbjct: 63  SSTSKTVILDKSQRDDHDVDYLFGQVAIDKPFVDWSGNCGNLTAAVGAFAITQGLVDSAK 122

Query: 126 VPRNGIAVVRIWQANIGKTIIAHVPITDGAVQETGDFELDGVTFPAAEVQLEFMNPAAEE 185
           +P NGIAVV+IWQANI KTIIAHVP+ DG VQE GDFELDGVTFPAAEV +EF++PA  E
Sbjct: 123 IPDNGIAVVKIWQANINKTIIAHVPMVDGEVQELGDFELDGVTFPAAEVLVEFVDPADGE 182

Query: 186 EGAGGSMFPTGNLVDDLEVPGVGTLKVTMINAGIPTIFVNAEAIGYTGTELQGDINGDPK 245
               G MFPTGNLVD LEVPG      T INAGIPTIF+ AE +GY GTELQ  INGD  
Sbjct: 183 ----GDMFPTGNLVDKLEVPGEPVFDATFINAGIPTIFLKAEQLGYEGTELQEAINGDAA 238

Query: 246 ALAMFETIRAYGALRMGLIQNLEDAAKRQHTPKVAFVARPADYLASSGKPVAAGDVDLLV 305
           AL  FETIRA+GAL+MGLIQ+L++AA RQHTPK+AFVA    Y +SSGK +AA ++DL V
Sbjct: 239 ALERFETIRAHGALQMGLIQSLDEAAGRQHTPKIAFVAPAKAYTSSSGKQIAAEEIDLHV 298

Query: 306 RALSMGKLHHAMMGTAAVAIGTAAAIDGTLVNLAAGGIPRNAVRFGHPSGTLRVGAEAQQ 365
           RALSMGKLHHAMMGTAAVAIGTAA+I GTLVN AAGG  R +VRFGHPSGTL+VGA+A +
Sbjct: 299 RALSMGKLHHAMMGTAAVAIGTAASIPGTLVNQAAGGQARESVRFGHPSGTLKVGAKASE 358

Query: 366 VDGEWTVTKAIMSRSARVLMEGWVRVP 392
            +G W V K  MSRSARVLM+GWV VP
Sbjct: 359 QEGRWQVEKVSMSRSARVLMQGWVCVP 385