Pairwise Alignments

Query, 396 a.a., 3-methylitaconate isomerase from Pseudomonas fluorescens FW300-N2E3

Subject, 397 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  647 bits (1668), Expect = 0.0
 Identities = 322/388 (82%), Positives = 354/388 (91%)

Query: 5   PQIKIPATYMRGGTSKGVFFSLQDLPESAQVPGPSRDALLLRVIGSPDPYEKQIDGMGGA 64
           PQIK+ ATYMRGGTSKGVFF LQDLPE+AQVPGP+RDALLLRVIGSPDPY KQIDGMGGA
Sbjct: 8   PQIKVAATYMRGGTSKGVFFRLQDLPEAAQVPGPARDALLLRVIGSPDPYAKQIDGMGGA 67

Query: 65  TSSTSKTVIVSKSIKADHDVDYLFGQVSIDKPFVDWSGNCGNLSAAVGSFAISSGLVEAS 124
           TSSTSKTVI+S S KA+HDVDYLFGQVSIDKPFVDWSGNCGNL+AAVG+FAIS+GL++A+
Sbjct: 68  TSSTSKTVILSHSSKANHDVDYLFGQVSIDKPFVDWSGNCGNLTAAVGAFAISNGLIDAA 127

Query: 125 RVPRNGIAVVRIWQANIGKTIIAHVPITDGAVQETGDFELDGVTFPAAEVQLEFMNPAAE 184
           R+PRNG+  VRIWQANIGKTIIAHVPITDGAVQETGDFELDGVTFPAAEVQ+EFMNPAA+
Sbjct: 128 RIPRNGVCTVRIWQANIGKTIIAHVPITDGAVQETGDFELDGVTFPAAEVQIEFMNPAAD 187

Query: 185 EEGAGGSMFPTGNLVDDLEVPGVGTLKVTMINAGIPTIFVNAEAIGYTGTELQGDINGDP 244
           ++G GG MFPTGNLVD LEVPG+G    TMINAGIPTIF+NAE +GYTGTELQ DIN D 
Sbjct: 188 DDGEGGCMFPTGNLVDVLEVPGIGRFNATMINAGIPTIFINAEDLGYTGTELQDDINSDN 247

Query: 245 KALAMFETIRAYGALRMGLIQNLEDAAKRQHTPKVAFVARPADYLASSGKPVAAGDVDLL 304
            ALA FETIRA+GALRMGLI+++++AA RQHTPK+AFVA P  Y +SSGK VAA DVDLL
Sbjct: 248 AALAKFETIRAHGALRMGLIKHIDEAASRQHTPKIAFVAPPKSYASSSGKTVAAEDVDLL 307

Query: 305 VRALSMGKLHHAMMGTAAVAIGTAAAIDGTLVNLAAGGIPRNAVRFGHPSGTLRVGAEAQ 364
           VRALSMGKLHHAMMGTAAVAIGTAAAI GTLVNLAAGG  + AVRFGHPSGTLRVGA+A 
Sbjct: 308 VRALSMGKLHHAMMGTAAVAIGTAAAIPGTLVNLAAGGGEKEAVRFGHPSGTLRVGAQAV 367

Query: 365 QVDGEWTVTKAIMSRSARVLMEGWVRVP 392
           Q +GEWTV KAIMSRSARVLMEG+VRVP
Sbjct: 368 QENGEWTVIKAIMSRSARVLMEGFVRVP 395