Pairwise Alignments

Query, 873 a.a., DNA topoisomerase I from Pseudomonas fluorescens FW300-N2E3

Subject, 878 a.a., DNA topoisomerase I (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1185 bits (3065), Expect = 0.0
 Identities = 591/877 (67%), Positives = 704/877 (80%), Gaps = 17/877 (1%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE 60
           MGKSLVIVESPAKAKTINKYLG +++VKSS+GHIRDLPTS  +  +++  +      A E
Sbjct: 1   MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSISDGTEKVKS------AAE 54

Query: 61  VPALSPKEKAR-------KQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTI 113
           V  +SP+EKAR       + LVSRMGV+P+ GW AKY+ILPGKEKV++EL+ LA  AD I
Sbjct: 55  VKKMSPEEKARYKKVKDHQALVSRMGVNPEKGWAAKYQILPGKEKVVKELQALADSADQI 114

Query: 114 YLATDLDREGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQ 173
           YLATDLDREGEAIAWHL+E IGGD SRY+RVVFNEITK AIQEAFS+P  LD + VNAQQ
Sbjct: 115 YLATDLDREGEAIAWHLQEVIGGDPSRYQRVVFNEITKSAIQEAFSKPASLDTNMVNAQQ 174

Query: 174 ARRFLDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADL 233
           ARRFLDRVVG+MVSPLLW K+ARGLSAGRVQSVAV+LVVERE EI+AF PEE+W+VHA L
Sbjct: 175 ARRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDVHAQL 234

Query: 234 GTAKGANVRFEVARENGEAFKPLNEAQAMAALEKLKASSYTIAKREDKPTSSKPSAPFIT 293
            T     +R EV +    AF+P NE QA+AA++ L ++S+ +  REDK T SKPSAPFIT
Sbjct: 235 NTPSSEALRMEVVKYLDSAFEPTNEQQALAAVQALSSASFKVIAREDKATQSKPSAPFIT 294

Query: 294 STLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIEGEFGSK 353
           STLQQAAS RLGFGVKKTMMMAQRLYEAG+ITYMRTDSTNLS +A+   R  I  E+G+K
Sbjct: 295 STLQQAASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVREMIGKEYGAK 354

Query: 354 YLPETPNVYSSKEGAQEAHEAIRPSDVNTDPSKLSGMERDAERLYELIWRQFVACQMLPA 413
           YLP  P  Y SKEGAQEAHEAIRPS+V  + + L+ MERDA+RLYELIWRQFV+CQM PA
Sbjct: 355 YLPAEPIRYGSKEGAQEAHEAIRPSNVKVEAAALTDMERDAQRLYELIWRQFVSCQMTPA 414

Query: 414 KYLSTTVSVAASGFELRAKGRILKFDGYTRVMPQMAKPGDDD-VLPDMAQGDVLKLIKLD 472
            Y +T ++V A+ +EL+A GRIL+FDG+TRV   + K  ++D  LP + +GDVL L++L+
Sbjct: 415 LYDATKLTVKAADYELKATGRILRFDGWTRVQTAIKKKNEEDNTLPAVNEGDVLSLVELE 474

Query: 473 PSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDI 532
           P QHFTKPPARYSEASLVKE+EKRGIGRPSTYA IISTIQ+RGYV + NRRFY+EKMG+I
Sbjct: 475 PKQHFTKPPARYSEASLVKELEKRGIGRPSTYATIISTIQERGYVKVENRRFYAEKMGEI 534

Query: 533 VTERLSESFSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESA--EN 590
           V+ERL  SF+ LM Y FTA ME+ LDDVA+GE DWK VLD FY DF K+LE AE A  E 
Sbjct: 535 VSERLVNSFAELMSYDFTASMEQTLDDVAKGELDWKKVLDGFYADFTKQLEKAELAPEEG 594

Query: 591 GMRANQPVMTDIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAAD 650
           GMR NQ VMT+I C TCGRPM IRT +TGVFLGCSGY LPPKERCK T+NL PG E  +D
Sbjct: 595 GMRLNQMVMTNIKCPTCGRPMGIRTGTTGVFLGCSGYELPPKERCKTTMNLTPGIEAISD 654

Query: 651 DEGESESLVLRGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEG 710
            E ++E+  LR KHRC IC TAMD+YLLDEKRKLH+CGNNP C GYE+EEG ++IKGYEG
Sbjct: 655 SE-DAETDALRAKHRCGICGTAMDSYLLDEKRKLHVCGNNPVCEGYEVEEGQFKIKGYEG 713

Query: 711 PSLECDKCGSEMQLKTGRFGKFFGCTNATCKNTRKLLKSGDAAPPKMDPVKMPELKCEKV 770
           P +ECD+CG +M+LK GRFGK+FGCTN  CKNTRKLLK+G+AAPPK DP+ +PELKC K 
Sbjct: 714 PLIECDRCGHDMELKNGRFGKYFGCTNEECKNTRKLLKNGEAAPPKEDPIYLPELKCSKS 773

Query: 771 NDTYILRDGASGLFLAASQFPKNRETRAPLVIEIVPHKDEIDPKYHFLCAAPKKDPDGLP 830
           +  ++LRDGA+G+FLAAS FPK+RETRAPLV E+V +++ + PKY +L  AP  D DG  
Sbjct: 774 DAHFVLRDGAAGIFLAASTFPKSRETRAPLVEELVKYREFLWPKYQYLADAPIADDDGNK 833

Query: 831 AVIRYSRKTKEQYVQTEVEGKPTGWKAFYDGGKWVVE 867
           AV+++SRKTK+QYV TEV+GK TGW A Y  GKWV E
Sbjct: 834 AVVKFSRKTKDQYVATEVDGKATGWSAHYVNGKWVSE 870