Pairwise Alignments

Query, 795 a.a., DNA polymerase II (EC 2.7.7.7) from Pseudomonas fluorescens FW300-N1B4

Subject, 810 a.a., DNA polymerase II (RefSeq) from Shewanella sp. ANA-3

 Score =  631 bits (1628), Expect = 0.0
 Identities = 353/802 (44%), Positives = 481/802 (59%), Gaps = 35/802 (4%)

Query: 14  QGFVLTRHWRDTPAGTEVEFWLATDAGPRRVRLPHQPSVAFIP----AAQREQAEGMLHG 69
           QG VLTRH     A   ++++LAT +GP  V LP    + F      AA + Q  G+   
Sbjct: 18  QGRVLTRHAITRGATLVLQYYLATVSGPVLVELPDSEYICFCHQSDMAALQLQTPGLA-- 75

Query: 70  EKNVELKPLALLDFEHRPVLGLYCQQHGQLMRLETALRRSSVDVFEADVRPPERYMMERF 129
              +   PL L  F+ + V  +Y         L+     + + +FEAD+RP +R+++ERF
Sbjct: 76  ---LRFVPLTLKSFKRQSVAAIYAPSSSVFRHLQRIATDAGIPLFEADIRPEQRFLIERF 132

Query: 130 ITAPVLFGGTPSAEGLLLDAQMKPDPGYRPN---------LRLVSLDIETTAQGELYSIA 180
           +   V F G    +  + D Q+      R           LR +SLD E +  G LYS+A
Sbjct: 133 VALDVAFLGHFVGKAGI-DGQLSVFSAIRAKAVAPQSAIKLRSISLDFECSFDGLLYSVA 191

Query: 181 LEGCGER-----QVYMLGPPNGDDRGVDFQLEYCDSRTLLLKKLNEWFARHDPDAIIGWN 235
           L G   +     +V M+G    D       +E+ +    L+ +L  WF   DPD IIGW+
Sbjct: 192 LYGRDAQSQPYEKVIMVGEAQPD---AAIYIEWVNDEAALIHRLITWFTEFDPDVIIGWS 248

Query: 236 VVQFDLRVLHEHARRLAVPLKLGRGGEEMHWREHGSGNHYFASAAGRLIIDGIESLRSAT 295
           VV FDL +L+  A    +PL++GRGG  + W+          S  GR+++DGI+ L++A 
Sbjct: 249 VVTFDLALLYRRALLHRIPLRIGRGGALLEWKVENKFRPETLSLPGRVVLDGIDWLKAAF 308

Query: 296 WSFPSFSLENVAQTLLGEGKSIDNPYQRMDEINRMFAEDKPALAKYNLKDCELVTRIFAK 355
           + F  FSLE VAQ LLGEGK+I +   R  EI+ +FAE+K  LA YNL D  LV  IF  
Sbjct: 309 YQFERFSLEFVAQALLGEGKAIHDVENRAQEIDSLFAENKQGLAHYNLTDSRLVWDIFEH 368

Query: 356 TELLTFLLERASVTGLPADRSGGSVAAFTHLYMPLMHRQGFVAPNLGGKPPQASPGGFVM 415
           T+L  F L RA +TGL   R G SVAAF HLY+P +HR GFVAP         SPGG+VM
Sbjct: 369 TQLWDFALARAELTGLELGRVGASVAAFNHLYLPHLHRAGFVAPAEPASQGIESPGGYVM 428

Query: 416 DSQPGLYESVLVLDYKSLYPSIIRTFLIDPVGLIEGLKHPDDS-----ESVPGFRGARFS 470
           DS PG Y+ +LV D+KSLYPSIIRTFLIDP GLIEGL + D S     E+VPGF GARF+
Sbjct: 429 DSVPGFYQHILVFDFKSLYPSIIRTFLIDPKGLIEGLDNEDGSALDEPETVPGFLGARFN 488

Query: 471 RTRHCLPAIVARVAEGRETAKREHNVPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSIT 530
           R +  LP ++  ++E RE AKRE N PLSQA+KIIMN+ YGVLGS GC F D +LASSIT
Sbjct: 489 RHQPILPKLIQNLSEQREKAKREANAPLSQAIKIIMNSLYGVLGSQGCVFHDAKLASSIT 548

Query: 531 LRGHEIMLRTRQLIEAQGHAVIYGDTDSTFVWLRRAHGQAEAAQIGHALVDHVNQWWREH 590
           +RGH+IM +TR  IE  G+ VIYGDTDSTFV+L      ++   +G  +   +NQ W+  
Sbjct: 549 MRGHQIMKQTRAWIEEMGYQVIYGDTDSTFVYLGPEPDLSDINALGKQIAARMNQQWQSK 608

Query: 591 VKQEYGLESALELQFETHYKRFLMPTIRGAEEGSKKRYAGLVTRADGTDEMVYKGLETVR 650
           + QE+ LES LELQFE HY++F MPT+RG+EEGSKKRY G      G  E+ +KG+E VR
Sbjct: 609 IAQEFQLESFLELQFERHYEQFFMPTLRGSEEGSKKRYVGAWRNNSGALEITFKGMEQVR 668

Query: 651 TDWSPLARQFQQELYLRIFNRKPYQDYVRDYVRKTLAGEFDERLIYRKRLRRTLDDYQRN 710
           +DWSPLAR+ Q ELY R+FN++    Y+ D + +  AG+ D+ L++ KR+RR LD+Y   
Sbjct: 669 SDWSPLARKVQAELYERMFNQRDISGYLADVIGELQAGKRDDELVFSKRMRRNLDEYTAK 728

Query: 711 VPPHVRAARIADDYNDQQGRPRQYQNGGWISYVITVAGPEPLEIRSAPIDYDHYVTRQLQ 770
             PHV+ AR      +  G+    + G  I YVITV GPEP+  RS+ IDY +Y+ +Q+ 
Sbjct: 729 SSPHVKVAR---QLCELTGKSSFGKRGAQIDYVITVNGPEPVSHRSSTIDYQYYIDKQIG 785

Query: 771 PVADAILPFVDDDFSTLIGGQL 792
           P+A+ +   +  +++++   QL
Sbjct: 786 PIAEPVFSIMKLNYTSITSNQL 807