Pairwise Alignments

Query, 368 a.a., FOG: GGDEF domain from Pseudomonas fluorescens FW300-N1B4

Subject, 698 a.a., diguanylate cyclase with PAS/PAC sensor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  126 bits (316), Expect = 2e-33
 Identities = 86/203 (42%), Positives = 104/203 (51%), Gaps = 10/203 (4%)

Query: 164 WLVLYARYVQMSRQRMRQRRFALQAHQ--DTLRGMMRQLEGLVATDELTGLFNRRHFL-R 220
           W+ LYAR          +  F     Q  DTLR     LE L  TDELTG+ NRRHF+ R
Sbjct: 474 WVSLYARRTGTPEAPEVESFFLDVTDQVEDTLR-----LEQLATTDELTGVANRRHFMAR 528

Query: 221 LASRELNAMETDVVHGLALIDLDHFKRINDVHGHAAGDQVLQAFAGVATACLRDGDVLAR 280
           L      A        + L+D DHFK IND  GH AGD VL+    V    LR+ D++ R
Sbjct: 529 LEDEAARAQRYGRPLSVLLLDADHFKSINDTWGHEAGDMVLRHITDVMGLSLRENDLIGR 588

Query: 281 YGGEEFVVLLPDCDAERLTACCERLRIAFMDVELVGLDV-RNLSLSVGMT-LLALDDDLD 338
            GGEEF VLLP+   ER     ER+R A  D  +   DV    ++SVG       +D LD
Sbjct: 589 LGGEEFGVLLPETAQERALRTAERIRAAVEDAPVAVRDVWVGCTVSVGAAEYRGANDSLD 648

Query: 339 DALHRADQALYRAKRDGRNRCAA 361
           D + RAD  L RAK +GRNR  A
Sbjct: 649 DLIRRADHMLMRAKEEGRNRVCA 671