Pairwise Alignments

Query, 911 a.a., Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 1106 a.a., preprotein translocase SecA subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  629 bits (1623), Expect = 0.0
 Identities = 417/1135 (36%), Positives = 577/1135 (50%), Gaps = 260/1135 (22%)

Query: 2    FAPLLKKLFGSKNEREVKRMLKTVQLVNAFEEQMVALSDDQLRAKTD------------- 48
            F   L  +FG+K+ R++K +   V+ + A   ++ AL +D LRAKT+             
Sbjct: 3    FNEFLSSIFGNKSTRDMKEIKPWVEKIKAAYPEIEALDNDALRAKTEELKKYIRESATDE 62

Query: 49   -----EFKARLAKGE------------------------TLDKLLPEAFAVAREAGKR-- 77
                 E KA +   E                         L+++LP AF++ +   KR  
Sbjct: 63   RAKVEELKASIESTELEDREEVFAQIDKIEKEILEKYEKALEEVLPVAFSIVKATAKRFT 122

Query: 78   -------------------------------------------VMGMRHFDVQLIGGMTL 94
                                                       V  M H+DVQL GG+ L
Sbjct: 123  ENEEIVVTATEFDRHLAATKDFVRIEGDKAIYQNHWNAGGNDTVWNMIHYDVQLFGGVVL 182

Query: 95   HEGMIAEMRTGEGKTLVATLGVYLNALSGRGVHVVTVNDYLARRDANWMRPLYEFLGMTV 154
            H+G IAEM TGEGKTLVATL V+LNAL+G GVHVVTVNDYLA+RD+ WM PLY F G++V
Sbjct: 183  HKGKIAEMATGEGKTLVATLPVFLNALTGNGVHVVTVNDYLAKRDSEWMGPLYMFHGLSV 242

Query: 155  GVVTPFQPPEE-KRAAYAADITYGTNNEFGFDYLRDNMAFSMEEKFQRELNFA------- 206
              +   QP  + +R AY ADIT+GTNNEFGFDYLRDNMA S ++  QR+ N+A       
Sbjct: 243  DCIDRHQPNSDARRQAYLADITFGTNNEFGFDYLRDNMAISPKDLVQRQHNYAIVDEVDS 302

Query: 207  -VIDEVDSILIDEARTPL---------------IISGQAEDSSKLYIEINKLIPQLE--- 247
             +ID+  + LI     P                ++  Q   ++K   E  +LI   +   
Sbjct: 303  VLIDDARTPLIISGPVPKGDDQLFEQLRPLVERLVEAQKALATKYLSEAKRLIASNDKKE 362

Query: 248  ----------------------------------LHVEEVE--------GEVTKAGHYTV 265
                                              L  EE+          EVT+  ++ +
Sbjct: 363  VEEGFLALYRSHKCLPKNKALIKFLSEQGIKAGMLKTEEIYMEQNNKRMHEVTEPLYFVI 422

Query: 266  DEKTRQVELNEAGHQFI-----------------------EDMLTRVGLLAEGESLYSAH 302
            +EK   V+L + G   I                          LT   LL + + L + +
Sbjct: 423  EEKLNSVDLTDKGIDLITGNSEDPTLFVLPDIAAQLSELENQNLTNEQLLEKKDELLTNY 482

Query: 303  NLGL--LTHVYAGLRAHKLFNRNVEYIVQDGQVVLVDEHTGRTMPGRRLSEGLHQAIEAK 360
             +    +  +   L+A+ +F ++ EY+V DGQV +VDE TGR M GRR S+GLHQAIEAK
Sbjct: 483  AIKSERVHTINQLLKAYTMFEKDDEYVVIDGQVKIVDEQTGRIMEGRRYSDGLHQAIEAK 542

Query: 361  EHLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFHQIYGLQVMVIPPNKPLAR 420
            E + ++A +QT A+ T QNYFR+Y+KLSGMTGTA+TEA E   IY L V+VIP N+P+AR
Sbjct: 543  ERVKVEAATQTFATITLQNYFRMYHKLSGMTGTAETEAGELWDIYKLDVVVIPTNRPIAR 602

Query: 421  KDYNDLVFLTAEEKYAAIIGDIKECMAQGRPVLVGTATIETSEHMSSLLVKEGIEHKVLN 480
            KD ND V+ T  EKY A+I +I++ +  GRPVLVGT ++E SE +S +L    IEH VLN
Sbjct: 603  KDMNDRVYKTKREKYKAVIEEIEKLVQAGRPVLVGTTSVEISEMLSKMLTMRKIEHSVLN 662

Query: 481  AKFHEKEAEIIAQAGRPGALTIATNMAGRGTDILLGGNWEVEVASLEDPTPEQIAQIKAD 540
            AK H+KEAEI+A+AG   A+TIATNMAGRGTDI L              +PE        
Sbjct: 663  AKLHQKEAEIVAKAGFSCAVTIATNMAGRGTDIKL--------------SPE-------- 700

Query: 541  WQKRHQQVLESGGLQVIASERHESRRIDNQLRGRAGRQGDAGSSRFYLSLEDSLMRIFAS 600
                   V  +GGL +I +ERHESRR+D QLRGRAGRQGD GSS F++SLED LMR+F+S
Sbjct: 701  -------VKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSVFFVSLEDDLMRLFSS 753

Query: 601  DRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVNNEQRKVIY 660
            DR+ + M  LG Q GE IEH+M++N+IE+AQ+KVE  NF IRK+LLE+DDV N+QR V+Y
Sbjct: 754  DRIASVMDKLGFQEGEMIEHKMISNSIERAQKKVEENNFGIRKRLLEYDDVMNKQRTVVY 813

Query: 661  HMRNSLLAADNIGETIADFRQD----------------VLNATVSAHIPPQSLPEQWDVA 704
              R   L  + IG  I +   D                 L  T++   P     E++   
Sbjct: 814  TKRRHALMGERIGMDIVNMIWDRCANAIENNDYEGCQMELLQTLAMETP--FTEEEFRNE 871

Query: 705  GLEAALQSDFGVALP----------------IQQWLDEDDHLYEETL----REKLMNELI 744
              +   +  F +A+                 I+Q  +   H+YE  L      K M  + 
Sbjct: 872  KKDTLAEKTFNIAMENFKRKTERLAQIANPVIKQVYENQGHMYENILIPITDGKRMYNIS 931

Query: 745  AAYNEKEDQAGAEALRTFEKQIVLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKNPKQEYK 804
                   +    E ++ FEK I+L V+D+ WK++L  +D L+H +    Y QK+P   YK
Sbjct: 932  CNLKAAYESESKEVVKAFEKSILLHVIDEAWKENLRELDELKHSVQNASYEQKDPLLIYK 991

Query: 805  RESFTLFSELLDSIKRDSIRVLSHVQVR-REDPIEEEARLRQEAEALAARMQFQHDEAPG 863
             ES TLF  +++ I   +I +L   Q+  +E P +E+   R E    A     + D +  
Sbjct: 992  LESVTLFDAMVNKINNQTISILMRGQIPVQEAPADEQQPRRVEVRQAAPEQ--RQDMSKY 1049

Query: 864  LEQPEVLGEEVDVALAT---------APVRNEQKLGRNELCYCGSGKKFKHCHGQ 909
             EQ + L +    A A+          P+R E+ +GRN+ C CGSGKK+K+CHGQ
Sbjct: 1050 REQKQDLSDPNQQAAASQDTREQQKREPIRAEKTVGRNDPCPCGSGKKYKNCHGQ 1104