Pairwise Alignments

Query, 168 a.a., Transcriptional activator RfaH from Pseudomonas fluorescens FW300-N1B4

Subject, 183 a.a., transcription antitermination protein NusG (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 60.5 bits (145), Expect = 2e-14
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 22/182 (12%)

Query: 5   AEHTAKAWYLLQCKPKQDERA----EEHLQRQGYACF--RSTYRRERVLR---GQRRVIS 55
           A+   K WY++Q     + R      E+++  G   +        E V+    GQRR   
Sbjct: 4   AKEAKKRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSE 63

Query: 56  ESLFPGYLFIQLSLQD-SWGPLRSTRGVSRVVGFGG----QPLPIRD----ALIDELQER 106
              FPGY+ +Q+ + D SW  ++S   + RV+GF G    +P PI D    A++  LQE 
Sbjct: 64  RKFFPGYVLVQMEMNDDSWHLVKS---IPRVLGFIGGTSDRPAPISDREADAILRRLQET 120

Query: 107 DSQAIVTTLLRHGDTVRITEGPFSDLEAVFLAMD-GEERVLLMMNFLQREQHISLPLAGV 165
            +      +   G+ VR+ +GPF+D       +D  + RV + +    R   + L  + V
Sbjct: 121 TASPTHRVIFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQV 180

Query: 166 NK 167
            K
Sbjct: 181 EK 182