Pairwise Alignments

Query, 311 a.a., Two-component response regulator from Pseudomonas fluorescens FW300-N1B4

Subject, 485 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  127 bits (318), Expect = 7e-34
 Identities = 70/182 (38%), Positives = 108/182 (59%), Gaps = 8/182 (4%)

Query: 119 ICFRQADTLGRHKRELLALSRTDSLTGLLNHGAWKDQLEIEFQRCQRQQQGGAIALIDID 178
           I F    TLGR++R+L  ++ TD LTG  N   +++       + +  Q   +I LIDID
Sbjct: 305 ILFISNMTLGRYQRKLEIMASTDKLTGAANRQVFEEYFHQALDKAKLSQTSISILLIDID 364

Query: 179 HFKTINDTYGHVAGDIVLRQLSKMLKQNLRAADVAGRYGGDEFCVLLPDLPLDRAAVAMD 238
           HFK +ND+YGH  GD+VL+ ++ +L+  L+  D+  R+GG+EF VLLP++ L RAA   +
Sbjct: 365 HFKKVNDSYGHSVGDLVLKTVTNLLRSQLKPQDILCRWGGEEFLVLLPEMDLSRAAELAE 424

Query: 239 ALRDRFATLGYEQNPA-LKVSLSIGLAAF---NPAHDDATLWLNDADQALYEAKSTGRNR 294
             RD  +    + N   + +++SIG+A +    PA D     +  AD ALY+AK  GRN+
Sbjct: 425 RFRDSISQRELKVNGVHIAITVSIGVAEYQKLEPAED----LIKRADLALYQAKEAGRNQ 480

Query: 295 VI 296
           V+
Sbjct: 481 VV 482