Pairwise Alignments

Query, 220 a.a., Amino acid ABC transporter, permease protein from Pseudomonas fluorescens FW300-N1B4

Subject, 596 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  120 bits (300), Expect = 7e-32
 Identities = 66/200 (33%), Positives = 114/200 (57%), Gaps = 2/200 (1%)

Query: 21  GFLTSVQCSALAILLGTLVGIVAGLVLTYGTFWMRAPFRFYVDIIRGTPVFVLVLACFYM 80
           G   S+  + +AI +   +G+V G+  T      R P   Y+++IRG P+ +++   ++ 
Sbjct: 389 GLAYSLLMAVIAISVSFFIGLVVGIGRTSDNRICRIPCLLYIELIRGNPLIIVIFWIYFF 448

Query: 81  APAL-GWQISAFGAGTLGLTLFCGSHVAEIVRGALQALPSGQMEASKAIGLTFYQALGYV 139
            P L     + F + T+ LTLF G+++AEIVR  +Q +P+GQ+EA+ + GLTF Q +  +
Sbjct: 449 IPVLFNTFFNVFWSATIALTLFTGAYLAEIVRAGIQNIPAGQVEAAYSTGLTFVQTMRRI 508

Query: 140 LLPQALRQILPTWVNSSTEIVKASTLLSVIGVAELLLSTQQIIARTFM-TLEFYLFAGLL 198
           +LPQAL+Q++P  V     I K ++L  V+GV EL    Q I  R  +  +E Y     L
Sbjct: 509 ILPQALKQMIPAIVGQFIAIFKDTSLAFVLGVLELTFVAQGINNRLMVYPMEIYGTVAFL 568

Query: 199 FFIINYAIELLGRHIEKRVA 218
           +FI  +++ +    +E+R++
Sbjct: 569 YFICCWSMSVYAARLERRLS 588



 Score = 87.8 bits (216), Expect = 4e-22
 Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 21/208 (10%)

Query: 25  SVQCSALAILLGTLVGIVAGLVLTYGTFWMRAPFRF----YVDIIRGTPVFVLVLACFYM 80
           S+  SALA+ LGT++GI            + AP R      V+  R TP+ V +   ++ 
Sbjct: 68  SLISSALALGLGTVLGIAR--------LSLFAPLRLTATAVVEFFRNTPLLVQLFFWYFA 119

Query: 81  APA---------LGWQISAFGAGTLGLTLFCGSHVAEIVRGALQALPSGQMEASKAIGLT 131
            PA         L      F   T+GL+++  + +AE++R  LQ++P G +EA+ + GL 
Sbjct: 120 FPAILPENIRELLFTGNFEFWCATIGLSVYTSAFMAEVIRAGLQSIPKGLLEAAYSSGLN 179

Query: 132 FYQALGYVLLPQALRQILPTWVNSSTEIVKASTLLSVIGVAELLLSTQQIIARTFMTLEF 191
           + Q L  ++LP A R I+P   +     +K S+L  V+GVAEL   +QQ+ + TF   E 
Sbjct: 180 YVQVLRTIILPMAFRAIIPPLGSEFLNNMKNSSLAMVVGVAELTWQSQQVESLTFKGFEA 239

Query: 192 YLFAGLLFFIINYAIELLGRHIEKRVAL 219
              A +L+  ++  I  +   +  ++ L
Sbjct: 240 TSAATVLYLSLSLLISFILNGVNGKMRL 267