Pairwise Alignments

Query, 349 a.a., RecA protein from Pseudomonas fluorescens FW300-N1B4

Subject, 357 a.a., recombinase A (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  406 bits (1044), Expect = e-118
 Identities = 204/346 (58%), Positives = 265/346 (76%), Gaps = 3/346 (0%)

Query: 5   EGKQKALKQALEQIERQFGKGSVMRMGDNERVQIDAISTGSLGLDAALGIGGLPKGRIVE 64
           E +++AL  AL  IER++G+GSVM++ D   V I  I TGS+GLD ALG+GG+P+GR+ E
Sbjct: 11  EMRREALSTALSTIERKYGQGSVMKLSDTAHVNIPVIPTGSIGLDLALGVGGIPRGRVSE 70

Query: 65  IYGPESSGKTTLTLSVIAQAQKAGCTCAFVDAEHALDPEYAGKLGVIVDDLLVSQPDTGE 124
           IYGPESSGKTTL L +IA+ QK G T AF+DAEHALD  YA +LGV  D+LL+SQPD GE
Sbjct: 71  IYGPESSGKTTLALHIIAECQKLGGTAAFIDAEHALDTNYARRLGVKTDELLISQPDFGE 130

Query: 125 QALEITDMLVRSNAVDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIK 184
           QAL+I DMLVRS+AVD++V+DSVAAL+P+AE+EG MG+M VG QARLMS ALRK+TG I 
Sbjct: 131 QALDIADMLVRSSAVDIVVIDSVAALIPQAELEGVMGEMQVGGQARLMSHALRKLTGTIH 190

Query: 185 NANCLVIFINQIRMKIGVM-FGSPETTTGGNALKFYASVRLDIRRTGAVKDGDEVTGSAT 243
            +   VIFINQIRMKIG M +G+PETTTGGNALKFY+S+R+DIR+   +KD +EV GS T
Sbjct: 191 KSRTAVIFINQIRMKIGTMGYGNPETTTGGNALKFYSSIRMDIRKIQTLKDKEEVYGSRT 250

Query: 244 RVKVVKNKVSAPFRQAEFEIIYGAGINTMAEIIDLGSAAGLIEKSGSWYSYKGEKIGQGK 303
           RVKVVKNKV+ PFR+A F+I+YG GI+   E+IDLGS  G+IEKSGSW+++  E++GQGK
Sbjct: 251 RVKVVKNKVAPPFREALFDILYGTGISRTGELIDLGSDVGIIEKSGSWFAFGSERLGQGK 310

Query: 304 ANSCIYLKEHPAVAAELDTAIRE--AKLPKLSATPDSNSDKVPEDD 347
            N    L+E+ A+   ++  + E    +P     PD N+  + +D+
Sbjct: 311 ENVRALLEENEALRLNVEAKLIEHLGMMPSKVVDPDDNAGAMDDDE 356