Pairwise Alignments

Query, 338 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N1B4

Subject, 339 a.a., putative transcriptional regulator, AraC family from Phaeobacter inhibens DSM 17395

 Score =  107 bits (266), Expect = 6e-28
 Identities = 87/338 (25%), Positives = 152/338 (44%), Gaps = 11/338 (3%)

Query: 1   MRETD-----SVAVYFMYPMIHALREEP--QRLRSVLEQVGIDPALMDKPTARVPATAFA 53
           M+ TD     +V+  F+   ++ALR     +++ S L + G+  A       R+      
Sbjct: 1   MKTTDLTSLATVSSEFIEDWLNALRTHSSGEQMSSFLSRSGMT-APNGISAQRITLDQIF 59

Query: 54  ALWLVQIRELNDEFFRLDSHGMPPGSFALICRALIQEPTLEKAMRQCLANFALFLSDFRG 113
            L+ +   E  DE   L +  +   +   +  A+ +  +L  A+ +    + L L D++ 
Sbjct: 60  RLYQIAAVETGDEMMGLWNRPIRARALQHLLTAVREASSLTSALYRFSTFWNLLLDDYQF 119

Query: 114 TLSVRGKRAVISLQTRAQDNEVSRLGEETFLVLMISLLCWLGGRRIPIDRADFRHQRLSL 173
            L  R    V+ L+    D    R G    L L   L+ WL G  +P+    F       
Sbjct: 120 ELHTRDDLVVLELRPIG-DQVPQRFGHMLILKLAHGLMSWLVGHEVPVKAVQFAFGCPEF 178

Query: 174 RDD-AMLWGPNLTFGTERTEIEFASHYLRLPVIQDLASLKVFLRTAPQWLVIRFRNQHGL 232
            +D A ++  ++ FG   + I F       P  +    +  FLR AP+  +     +H  
Sbjct: 179 AEDYATIFPASVDFGASYSSITFERTMFGPPHSRSKPEVIKFLRRAPRDWIFTSCWEHTQ 238

Query: 233 TSQVHQRLRHSHYSEWPTLQAFALEQHLSPSTFRRKLGREGCSYQEIKDEVRRAVAFERL 292
           + Q+ + L  S++ +   + A A    ++P T  R+L  +G S+Q IKD +RR +A   L
Sbjct: 239 SLQIREFLYQSNWVDCQLVDA-ARALRVTPRTLMRRLDADGTSFQAIKDGLRRDIAIRDL 297

Query: 293 RQSKASISDIAEQLGFQEPSAFHRAFKKWTGESPGRYR 330
           +  + S  +I++ +GF   + FHRAFK+WTG +P  YR
Sbjct: 298 QSGQKSTEEISQDVGFSTAANFHRAFKRWTGATPSSYR 335