Pairwise Alignments

Query, 428 a.a., Nitrate ABC transporter, nitrate-binding protein from Pseudomonas fluorescens FW300-N1B4

Subject, 466 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 72.0 bits (175), Expect = 4e-17
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 26/224 (11%)

Query: 61  KVGFIPLTDCASVVVAATQGFGEKYGLTITPSKEASWAGVRDKLLNGELDAAHVLYGLIY 120
           +VG++P++D    + A     G   GL +   +  SWA +   L +G LDAA ++  L  
Sbjct: 189 RVGYLPVSDHLLAMCADHLLRGR--GLPLLSRRYLSWAVLAGDLTHGRLDAAFIMAPLAL 246

Query: 121 GVQLGIGGPQKDMAMLMGLNQNGQAITLSNQLQQAGVTNGEQLAAKVKQGGTPLTFAQTF 180
            ++ G G P   +  +M  +  G A++LS Q ++  V             G P  F+   
Sbjct: 247 SLR-GAGAP---LRYVMDGHHEGSALSLSRQAERRRVM------------GLPGAFS--- 287

Query: 181 PTGTHAMWLNYWLASLGINPLTDVKTIVVPPPQMVANMRVGNMDGFCVGEPWGARAIADN 240
              TH + L +    L  + ++++ T+VV P  ++A+M+   +  F   EPW  + + + 
Sbjct: 288 ---THRVLLAH--LGLECSGVSNLPTLVVNPSSVIASMQHNEIGAFFCAEPWSTKCLHEG 342

Query: 241 IGFTALTTQKLWPDHPEKILGTTRAFVEQYPNTARALTMAVLDA 284
           +G+TAL +  + P H   IL   + F +++         A+L A
Sbjct: 343 VGYTALRSADIMPHHLCCILAVRQPFADRHGQVVADYVRALLAA 386