Pairwise Alignments

Query, 490 a.a., FIG01200701: possible membrane protein from Pseudomonas fluorescens FW300-N1B4

Subject, 458 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  178 bits (452), Expect = 3e-49
 Identities = 133/453 (29%), Positives = 200/453 (44%), Gaps = 46/453 (10%)

Query: 32  SASSTAPVTSVAKDAV----FTQEQLDQMLAPIALYPDPLLAQVLMATTYPGEIAEAVTW 87
           S S   P  S A+DAV    F+  +L QMLAPIALYPD LL  +L+A+TYP E+ +A  W
Sbjct: 16  SQSLLTPSVSRAEDAVQEIQFSDAELAQMLAPIALYPDSLLTHILIASTYPLEVVQANRW 75

Query: 88  SKAHPDAKGDDAVKQVANQPWDPSVQALVAFPQVMATLGQDPVWVQRLGDAFLAQPDDVM 147
              +   +G +AV +   + WDPSV ALVAFP ++  L  D  W Q+LGD FL   + V+
Sbjct: 76  RNKNKSLEGAEAVNRAEKKDWDPSVTALVAFPDLLQRLSDDLEWTQKLGDTFLQDEERVL 135

Query: 148 GGVQRLRHQAQAAGNLQSNQYQNVTVQAAPASAAPAPAPATSTSTIIIQPSDPQVVYVPT 207
             +Q LR QA+ A      +   VT                    I+I+P   +V+YVP 
Sbjct: 136 DSIQSLRQQAERANAFDDMENMKVT---------------KVNRQIVIEPVQREVIYVPY 180

Query: 208 YNPTTTYGTWPYPASPPVYYPPPP---AYYPGSALLAGLAFGTGVAI-IGSLWGDCDWDN 263
           Y+    YG W +   PPVY+  PP    YYPG  +     F +G+ I     +    W  
Sbjct: 181 YDTRVVYGHWHWYNYPPVYWAYPPHYARYYPGH-ISGHFYFNSGIHISFNYFFSAFSWRQ 239

Query: 264 NDIDIDVDRYNNINRNNQITR-----NQNNWQHNAVHRDGVPYRDSKSREQYGR----QL 314
               I V  +++  R    +R         W H  VHR GV YR  K + +Y +    + 
Sbjct: 240 R--HIVVTHHHHTTRYRPYSRIVTSSGAQRWHHKPVHRHGVAYRSPKVKARYDKYRPNRY 297

Query: 315 DGARQREAYRGDNAQRA---QAREKARGSMDKHGIERPATSNREARDSARKAQSATSPGN 371
           D        R  N+++A   QA+      + K   +  +    +AR    + Q+A     
Sbjct: 298 DVKHNSSMERYSNSKQAKPSQAKHYNAAQVQKRREQNFSHKLSDARSQHDRHQNAQKTPT 357

Query: 372 RMQAGTDRPKASD---RSQGTARSTRENQQPRKQTAQVNQRGQGDLQGRQTAQKRPAAST 428
           +     DR   +D   RS       R  +  R+++ Q N   Q +++  Q   K    S 
Sbjct: 358 KYYEKRDRLSLNDKANRSSSNKADNRTKEWNREKSPQRNDSYQREMKSHQRDNK----SH 413

Query: 429 GSAGSARNNAFAGVRSPSQANA-QASRGQASQA 460
                 R  +   V+SP +  + Q + G+ + +
Sbjct: 414 QQQSYQRERSHQPVKSPQRERSHQTNNGRGASS 446