Pairwise Alignments

Query, 807 a.a., UvrD/REP helicase family protein from Pseudomonas fluorescens FW300-N1B4

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score = 68.9 bits (167), Expect = 9e-16
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 43/225 (19%)

Query: 479 HLLDQSPPVMTYNRMFALFSEHSPE-------NLKLLSDELLRP-----------MSHLM 520
           H+    P   TY +++  + E            + L + ELLR              H++
Sbjct: 159 HINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHIL 218

Query: 521 IDEFQDVSPQIVSWIRASLAEIRSRGPAMHVGRGAQRSSLLCVGDDWQSIYGWRGSSPTY 580
           +DEFQD +    +W+R                 GAQ S+++ VGDD QSIYGWRG+    
Sbjct: 219 VDEFQDTNAIQYAWLRMMA--------------GAQ-SNVMIVGDDDQSIYGWRGARVEN 263

Query: 581 FMEFNKEFPSPSTTKVMLSDNYRSHQHIIDAAEHIVRAAPAIAGKKAKAS---GEPKALL 637
             +F +EFPS +T  + L  NYRS + I++A+  ++       GK+       GEP ++ 
Sbjct: 264 IEKFTREFPSVNT--IRLEQNYRSTKTILEASNTLIANNSERMGKQLWTDGLVGEPISVY 321

Query: 638 PV-NILDRDDQGMAQRLIEHYRKGDSI---LMLYRKSSDKSLIEE 678
              N LD + + +  ++     +G ++    +LYR ++   ++EE
Sbjct: 322 SAYNELD-EARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVLEE 365



 Score = 33.9 bits (76), Expect = 3e-05
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 16/71 (22%)

Query: 700 LTYHSAKGLQADAVFLLGDCQHLTSSPYKNQVYRMAGLGKAGDSEAYDSAQKDEILRLAY 759
           +T HSAKGL+   VF++G    +    + +Q+             A ++ + +E  RL Y
Sbjct: 557 MTLHSAKGLEFPLVFMVG----VEEGMFPSQM------------SAEEAGRLEEERRLCY 600

Query: 760 VGITRAVSHCY 770
           VG+TRA+   Y
Sbjct: 601 VGMTRAMQKLY 611



 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 128 VIAGAGAGKSTTLVLRILLLSHYLGFELSSMTVVTFTRESRKDFINKLIEL 178
           ++AGAG+GK+  LV RI  L         S+  VTFT ++  +   ++ EL
Sbjct: 28  ILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEEL 78