Pairwise Alignments

Query, 807 a.a., UvrD/REP helicase family protein from Pseudomonas fluorescens FW300-N1B4

Subject, 670 a.a., ATP-dependent DNA helicase Rep (RefSeq) from Shewanella amazonensis SB2B

 Score = 65.9 bits (159), Expect = 7e-15
 Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 24/174 (13%)

Query: 516 MSHLMIDEFQDVSPQIVSWIRASLAEIRSRGPAMHVGRGAQRSSLLCVGDDWQSIYGWRG 575
           + +L++DE+QD +      ++  + E               R+    VGDD QSIY WRG
Sbjct: 208 IQYLLVDEYQDTNGSQYELVKLLVGE---------------RARFTVVGDDDQSIYSWRG 252

Query: 576 SSPTYFMEFNKEFPSPSTTKVMLSDNYRSHQHIIDAAEHIVRAAPAIAGK---KAKASGE 632
           + P   +   K+FPS    K  L  NYRS Q I+ AA  ++   P +  K      A GE
Sbjct: 253 AKPQNLVLLGKDFPSLKLIK--LEQNYRSSQRILRAANILIANNPHVYDKSLFSELAYGE 310

Query: 633 PKALLPVNILDRDDQGMAQRLIEHYRKGDS----ILMLYRKSSDKSLIEEHIQS 682
           P  ++     +++ + +   +I H   G +      +LYR +    LIE  + +
Sbjct: 311 PMRVITALNEEQEAERVVAEIIRHRFVGKTSYGDYAILYRGNHQSRLIERALMT 364



 Score = 39.7 bits (91), Expect = 6e-07
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 8/81 (9%)

Query: 128 VIAGAGAGKSTTLVLRILLLSHYLGFELSSMTVVTFTRESRKDFINKLIELFAIWGRGIS 187
           V+AGAG+GK+  ++ +I  L    G++  ++  VTFT ++ ++   ++        + + 
Sbjct: 20  VLAGAGSGKTRVIINKIAYLVQKCGYQARNIAAVTFTNKAAREMKERV-------AQSMG 72

Query: 188 LKDARDL-VRTFHSRILPMVR 207
            K+AR L + TFH+  L +++
Sbjct: 73  RKEARGLWISTFHTLGLEILK 93



 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 17/70 (24%)

Query: 696 RLKQLTYHSAKGLQADAVFLLGDCQHLTSSPYKNQVYRMAGLGKAGDSEAYDSAQKDEIL 755
           +++ +T H++KGL+   VF++G  + +   P++  +               D    +E  
Sbjct: 552 QVQLMTLHASKGLEFPYVFMIGMEERIL--PHQTSI---------------DEDNVEEER 594

Query: 756 RLAYVGITRA 765
           RLAYVG+TRA
Sbjct: 595 RLAYVGVTRA 604