Pairwise Alignments

Query, 807 a.a., UvrD/REP helicase family protein from Pseudomonas fluorescens FW300-N1B4

Subject, 787 a.a., DNA helicase II UvrD from Phaeobacter inhibens DSM 17395

 Score = 69.7 bits (169), Expect = 6e-16
 Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 19/121 (15%)

Query: 519 LMIDEFQDVSPQIVSWIRASLAEIRSRGPAMHVGRGAQRSSLLCVGDDWQSIYGWRGSSP 578
           +M+DE+QD +     W+R                 GA ++ + CVGDD QSIYGWRG+  
Sbjct: 240 IMVDEYQDTNVAQYLWLRLLA--------------GAHKN-ICCVGDDDQSIYGWRGAEV 284

Query: 579 TYFMEFNKEFPSPSTTKVMLSDNYRSHQHIIDAAEHIVRAAPAIAGKK--AKASGEPKAL 636
              + F K+FP  +   V L  NYRS +HI+ AA  ++R      GK+   +A G  K  
Sbjct: 285 GNILRFEKDFPGANV--VRLEQNYRSTEHILSAASGVIRGNSGRLGKELWTEARGGEKVR 342

Query: 637 L 637
           L
Sbjct: 343 L 343



 Score = 38.1 bits (87), Expect = 2e-06
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 678 EHIQSVVNVDSSLPYDARRLKQLTYHSAKGLQADAVFLLGDCQHLTSSPYKNQVYRMAGL 737
           EH+  +++ D      A+++  +T H+AKGL+  AVFL G    L  S        + GL
Sbjct: 557 EHVSLIMDNDKQDA--AQKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDESGLKGL 614

Query: 738 GKAGDSEAYDSAQKDEILRLAYVGITRAVSHC 769
                         +E  RLAYVGITRA   C
Sbjct: 615 --------------EEERRLAYVGITRAEEIC 632



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 128 VIAGAGAGKSTTLVLRILLLSHYLGFELSSMTVVTFTRESRKDFINKLIELFAIWGRGIS 187
           ++AGAG GK+  L  RI+ L      + + +  VTFT ++ ++   ++  +    G+ + 
Sbjct: 48  MLAGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFTNKAAREMKERVAGML---GQAV- 103

Query: 188 LKDARDLVRTFHSRILPMVR 207
             +    + TFHS  + ++R
Sbjct: 104 --EGMPWLGTFHSICVKLLR 121