Pairwise Alignments

Query, 807 a.a., UvrD/REP helicase family protein from Pseudomonas fluorescens FW300-N1B4

Subject, 722 a.a., DNA-dependent helicase II (RefSeq) from Shewanella sp. ANA-3

 Score = 77.4 bits (189), Expect = 3e-18
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 25/168 (14%)

Query: 518 HLMIDEFQDVSPQIVSWIRASLAEIRSRGPAMHVGRGAQRSSLLCVGDDWQSIYGWRGSS 577
           H+++DEFQD +    +WIR                   Q ++++ VGDD QSIYGWRG+ 
Sbjct: 216 HILVDEFQDTNAIQYAWIRVL---------------AGQTANVMIVGDDDQSIYGWRGAQ 260

Query: 578 PTYFMEFNKEFPSPSTTKVMLSDNYRSHQHIIDAAEHIVRAAPAIAGKKA---KASGEPK 634
                 F ++FP+ +T  + L  NYRS  +I+ A+  ++   P   GK+    +A GEP 
Sbjct: 261 VENLHRFLRDFPTATT--IRLEQNYRSKGNILKASNALIANNPERLGKELWTDEADGEPI 318

Query: 635 AL-LPVNILDRDDQGMAQRLIEHYRKGDSI---LMLYRKSSDKSLIEE 678
           +L    N +D + + +  R+ + Y KG ++    +LYR ++   ++EE
Sbjct: 319 SLYCAFNEMD-EARFIVGRINDWYEKGGNLSDCAILYRSNAQSRVLEE 365



 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 16/71 (22%)

Query: 700 LTYHSAKGLQADAVFLLGDCQHLTSSPYKNQVYRMAGLGKAGDSEAYDSAQKDEILRLAY 759
           +T HSAKGL+   VF+ G  + +  S       +MA   + GD       + DE  RL Y
Sbjct: 557 MTLHSAKGLEFTMVFMAGVEEGIFPS-------KMAL--EEGD-------RLDEERRLCY 600

Query: 760 VGITRAVSHCY 770
           VG+TRA+   Y
Sbjct: 601 VGMTRAMEKLY 611



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 115 QWKMIFSDTPSTSVIAGAGAGKSTTLVLRILLLSHYLGFELSSMTVVTFTRES 167
           Q + + +   S  V+AGAG+GK+  L  RI  L         S+  VTFT ++
Sbjct: 14  QREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNKA 66