Pairwise Alignments

Query, 690 a.a., VgrG protein from Pseudomonas fluorescens FW300-N1B4

Subject, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  442 bits (1136), Expect = e-128
 Identities = 265/686 (38%), Positives = 372/686 (54%), Gaps = 34/686 (4%)

Query: 10  SLTLEGVSVD-LQVLSFVGREALNQP---------FCFDIELVSARPDLKLEELLHKSGC 59
           S+ +EG+  + L V  F G+E+L+           F ++++L S   +L  E+++ K   
Sbjct: 7   SIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKRAE 66

Query: 60  LTFGATGQ--GKIHGLVYRIEQGDSGKSLTRYSISLVPQLAYLRHNHDQQIFQQLSVPKI 117
           L      Q   ++HG+V    QGD G   T Y ++LVP L  L   H+ +IFQ+ +VP+I
Sbjct: 67  LKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPEI 126

Query: 118 IAQVLEARGILADAYSFQLGAIYPERVYCVQYDESDLHFIQRLCEEEGIHFHFQHSTSGH 177
           ++ +L+  GI  + Y+F L     +R +CVQY ESD+ F+ RL  EEG+ + F H    H
Sbjct: 127 LSILLQEMGI--NDYAFALKRDGVQREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGKH 184

Query: 178 KLVFGDDQTVFRKLA-PVSYQQDSGMAAKKPVIKRFNLRLETRTTRVSRRDYDFEKPRL- 235
            L F D      KL  P+ Y    G A   P I     R +   + V  +DY F+KP   
Sbjct: 185 TLYFSDASDSLSKLPEPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYS 244

Query: 236 ---LPEGAAKSAFAPDLEDYDYPGRFIDRARGKQLATRALERHRSDYQLAEGKGDEPTLV 292
                +G          + +D PGR+ D   G   +   L+  R     A G+ +EP L 
Sbjct: 245 FLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLR 304

Query: 293 SGHFMALSEHPRAEWNDLWLLLEIVHEGKQPQVLGENITSDVTHNKDDFHQGYRNRFLAT 352
           +G+   L EH     N  W+++ I H+G+QPQ L E+  S  T         Y N+F   
Sbjct: 305 AGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEDGGSGATT--------YSNQFSLI 356

Query: 353 PWDAHYRPALEHPKPKVLGSQTAIVTGPAGEEIHCDEYGRVKVQFHWDRDGQGHDTSSCW 412
           P   H+R A   PKP+V G   A V GP GEEI CDE+GRVK+ F WDR   G++ SSCW
Sbjct: 357 PGHLHWR-AEPQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCW 415

Query: 413 LRVATGWAGNAYGGIAIPRIGMEVLVTFLEGDPDQPLITGCLYHKENVVPYDLPANKTRS 472
           +RV+ GWAG+ YG IAIPRIG EV+V FL GDPDQP+ITG  YH  N  PY LP +KT++
Sbjct: 416 VRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKT 475

Query: 473 TFKTLSSPGGKGYNEFRIEDKKGAEQIYLHAQRDWDENIEHDQKIRIGNERHDTVEANAF 532
             +T  +  G+G+NE   ED+ G EQIYLHAQ+D+D  IE+D    I ++ H TVE + F
Sbjct: 476 VLRT-ETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQF 534

Query: 533 SEFKVEEHRLTHLDRTTEARADDHLTVGVTRHVKVGTAQFVEAGTEIHYHAGEKVVVEGG 592
           ++ K  +H     +       +  L++  + HVK G     EAGTEIH  AG+KVV+E G
Sbjct: 535 TQIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEAG 594

Query: 593 MELTAKAGGSFVKIDAGGVTISGAEVKVNSGGAPGAGTGIQILDPVIPWAAAKDKAGALL 652
            E+T KAGGSFVK+D  GV +SGA V +NSGG+ G+G+G     P +P     + A AL 
Sbjct: 595 SEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGSGSGFGGAMPALP--GGLEPAVALA 652

Query: 653 VPAAVQ---MAMAKAARAAGDIRCPI 675
            P  +    +  A+ A       CP+
Sbjct: 653 PPQTISYQALLQAEQANVPAVKVCPL 678