Pairwise Alignments

Query, 379 a.a., Membrane fusion component of tripartite multidrug resistance system from Pseudomonas fluorescens FW300-N1B4

Subject, 357 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  189 bits (481), Expect = 8e-53
 Identities = 120/353 (33%), Positives = 193/353 (54%), Gaps = 7/353 (1%)

Query: 28  IKWVLLLIVLSLAWYLLADRFTPYTQQARVGAFVIPVASEVAGRVIRVDVRNNQDVKAGD 87
           +K  +L  V    +++ AD   P T QA     V  V  +++G++  ++V NNQ V  GD
Sbjct: 11  VKIAMLGFVAVFGYFMFADTMMPLTPQAMATRVVTKVTPQISGKIQSINVNNNQVVAKGD 70

Query: 88  VLFEVDQQPYQIAVDRARADLESTRRQIGASTAGIASAQANLRAAQANELKARQDNQRLE 147
           +LF+VD  P+++AV  A+  LE  R+      A + +A+A + A+     + R++ +RL+
Sbjct: 71  LLFQVDPAPFELAVSHAKLALEQVRQDNAELDASLLAAKAEVNASATTAQQKRREAKRLD 130

Query: 148 GLYREDPGTISVRLLEVSRANREQAVSQVAAAHAEVQRAREQEGGSEEDNALLRSAATAL 207
            LY      +S +L + + ++   A + + AA+A +++ +   G   EDN  +R A  AL
Sbjct: 131 ALYVTH--GVSQQLRDQADSDAAAAEANLLAANARLEKLKVSRGFYGEDNLRVRQAMNAL 188

Query: 208 SKAELDLSNTQIRARSAGLITDLRTDVGQFATAGSPVMTLIAIHDVWISADMTENNLGLV 267
           ++AEL+LS TQIRA   G++T+L+ +VG FA  G P++ L++   + I AD  E  L  V
Sbjct: 189 AQAELNLSYTQIRADQDGVVTNLQLEVGSFAAVGQPLLALVS-DKLDIIADFREKTLRGV 247

Query: 268 EVGTPVSIVLDAMPGKVFEGRVRSVGYGVSVGQSTAPGSLPSVQNSRDWLRPAQRFPVII 327
               P  I  D  PG+++  +V SV  GVS GQ  A G L + Q S  W+R AQR  + +
Sbjct: 248 NAAYPALIAFDGEPGRLYHAQVSSVDAGVSAGQFDANGRLAAPQESDRWVRDAQRLRLHL 307

Query: 328 EFSEDSRKTLFASRAIRAGGQAEVMAFPTQDNPL-NLLGRLFVGLMSWLSYAY 379
              +DS+    A   + AG +A V   P  DN L NLL ++ + ++S L Y Y
Sbjct: 308 VL-DDSKSGNSAMNNLPAGARATVQLLP--DNTLFNLLAKVQIKVISLLHYIY 357