Pairwise Alignments

Query, 323 a.a., Site-specific recombinase, phage integrase family from Pseudomonas fluorescens FW300-N1B4

Subject, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

 Score = 82.4 bits (202), Expect = 1e-20
 Identities = 78/302 (25%), Positives = 138/302 (45%), Gaps = 22/302 (7%)

Query: 25  ANPLTLYLARLAPSSQLTMRYVLQDAADRLDFEDMNIEEIP---WHQLQPEDVVALVATL 81
           A PL  + A L     L++ Y  ++   +L+     + ++    W QL    V  LV   
Sbjct: 14  AQPLERFYAYLHTEKGLSL-YTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLVMQG 72

Query: 82  REDGYAPNTSSLYVNAVRGVMNEAWRMSLISQEHLLKMRSVKGIAGTRLSQG--RNLKRT 139
           +  G   ++ +  ++++R  ++       +     L+    KG++  R  +   +NL   
Sbjct: 73  KRQGMKASSIATRLSSLRSFLD------FLILRGELQANPAKGVSAPRKQRTLPKNLDVD 126

Query: 140 LIRDLMEVCAADPRPQGLRDAAIIGILYGSGMRKSESVNLDLAQVDFTERSLCVTAKGNK 199
            +  L+EV   D  P  +RD AI+ ++YG+G+R +E V++D+  V+ +E  + V  KGNK
Sbjct: 127 EMAQLLEV--TDDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNK 184

Query: 200 QLIKYAPAWAFAKLDAWLELRRSQLKEGETDDPFLFNRIRRGSHITRERITKHAIYYIAR 259
           +   +    A   +  WL+L RSQL +      F+    + G+ I+   + K    +  +
Sbjct: 185 ERKVWFAGQAQEWVGKWLKL-RSQLADSAETALFV---SKLGTRISHRSVQKRMAEWGQK 240

Query: 260 QRGAQVGVKIMPHDFRRSFITRVIE-EHDLSIAQKLAHHSNIQTTANYDVRDDNERRRAV 318
           Q    V   I PH  R SF T ++E  ++L   Q+L  H NI TT  Y   D     +  
Sbjct: 241 Q---AVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVY 297

Query: 319 DR 320
           D+
Sbjct: 298 DQ 299