Pairwise Alignments

Query, 323 a.a., Site-specific recombinase, phage integrase family from Pseudomonas fluorescens FW300-N1B4

Subject, 299 a.a., integrase/recombinase XerC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 89.0 bits (219), Expect = 1e-22
 Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 29/265 (10%)

Query: 59  MNIEEIPWHQLQPEDVVALVATLREDGYAPNTSSLYVNAVRGVMNEAWRMSLISQEHLLK 118
           +N+    W Q+        +A L   G +P + SL+++AV+      W   L+ +   ++
Sbjct: 48  LNVGREHWQQV--------LAKLHRKGLSPRSLSLWLSAVK-----QWGEFLL-RAGAIE 93

Query: 119 MRSVKGIAGTRLSQG--RNLKRTLIRDLMEVCAADPRPQGLRDAAIIGILYGSGMRKSES 176
           +   KG++  + ++   +N+    +  L+E+   DP    LRD AI+ + Y SG+R +E 
Sbjct: 94  LNPAKGLSAPKQAKPLPKNIDVDSLTHLLEIDGNDPLT--LRDKAIMELFYSSGLRLAEL 151

Query: 177 VNLDLAQVDFTERSLCVTAKGNKQLIKYAPAWAFAKLDAWLELRRSQLKEGETDDPFLFN 236
             LDL+ V + +R + V  KGNK+ I     +A   + AWLE RR      E +  F+  
Sbjct: 152 AALDLSSVQYDQREVRVLGKGNKERIVPVGRYAIDAISAWLECRRQ--IPCEDNALFVTE 209

Query: 237 RIRRGSHIT-RERITKHAIYYIARQRGAQVGVKIMPHDFRRSFITRVIEEH-DLSIAQKL 294
           + +R SH + + R++K         +   + +++ PH  R SF T ++E   DL   Q+L
Sbjct: 210 KGKRLSHRSIQARMSKWG-------QEQALSMRVHPHKLRHSFATHMLESSADLRAVQEL 262

Query: 295 AHHSNIQTTANYDVRDDNERRRAVD 319
             H N+ TT  Y   D     +  D
Sbjct: 263 LGHENLSTTQIYTSLDFQHLAKVYD 287