Pairwise Alignments

Query, 323 a.a., Site-specific recombinase, phage integrase family from Pseudomonas fluorescens FW300-N1B4

Subject, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  115 bits (288), Expect = 1e-30
 Identities = 82/298 (27%), Positives = 150/298 (50%), Gaps = 15/298 (5%)

Query: 25  ANPLTLYLARLAPSSQLTMRYVLQDAADRLDFEDMNIEEIPWHQLQPEDVVALVATLRED 84
           A    LYL+RLAP+SQ ++   ++  A  +D+ D  I +     +  +  + + A L  +
Sbjct: 4   ATAYALYLSRLAPNSQRSIASQMRSIAQLMDWPDEVIGK-QLSSINYQQAMQIRALLIHE 62

Query: 85  GYAPNTSSLYVNAVRGVMNEAWRMSLISQEHLLKMRSVKGIAGTR--LSQGRNLKRTLIR 142
            ++  + +  + A++ ++  A   +L+ +  + ++  +  IA  +    QG  L    + 
Sbjct: 63  QWSARSINRAMTAIKSIVKVA---ALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVT 119

Query: 143 DLMEVCAADPRPQGLRDAAIIGILYGSGMRKSESVNLDLAQVDFTERSLCVTA-KGNKQL 201
            L+ + +      GLR  AI  +  G+G+R+SE   L LA  D    ++ V A KGNK  
Sbjct: 120 KLLALLSKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSR 179

Query: 202 IKYAPAWAFAKLDAWLELRRSQLKEGETDDPFLFNRIRRGSHITRERITKHAIYYIARQR 261
           I + P W    + AWL +R+ QL       P + +    G  +    +++ A+Y + + +
Sbjct: 180 ILFLPDWVEQHVIAWLNVRKMQL------GPLICHCRTTGIIVHYRPVSRDALYRLVKDK 233

Query: 262 GAQVG-VKIMPHDFRRSFITRVIEEH-DLSIAQKLAHHSNIQTTANYDVRDDNERRRA 317
              +G V   PHD RR+FITR++E++ D++  +++A H++I TT  YD R D   R A
Sbjct: 234 LGDIGVVGASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIYDKRGDAFMREA 291