Pairwise Alignments

Query, 261 a.a., ABC-type polar amino acid transport system protein, substrate-binding protein from Pseudomonas fluorescens FW300-N1B4

Subject, 242 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 92.0 bits (227), Expect = 1e-23
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 1   MASSFTWAAELPASIKDKGEVVVAIMPNYPPMDFKDPAT-NTLTGLDVDLGNALAERLGV 59
           + + FT    L    K++  +VV     +PP ++    + + + G D+DL   +AE  G 
Sbjct: 6   LLAGFTALLLLSGCGKEQDYLVVGTNAAFPPFEYVGGVSGDQVMGFDIDLARKVAEDAGK 65

Query: 60  KIKWQETGFEQMINALTTDRVDMVMSGMTDTAERQASVTFVDYFTSGPQFYTLQKNKDT- 118
            +K +   F+ +I AL   ++DM+ SGMT T ERQASV F + +    Q   + K  D+ 
Sbjct: 66  TLKVENMKFDSLIVALNAGKIDMIASGMTITPERQASVDFSEPYYEATQVVLVNKQDDSI 125

Query: 119 NEIIDLCGKKVGTSRRTTFPAEIAEWSKANCEAAGKPAINVIGTEGSADARAQLRQSRID 178
           + + DL GK       +T      ++++           +V       +A  +L+  ++D
Sbjct: 126 HSLADLTGKHFAVQLGSTADMMAKKYTQ-----------SVTAFNTGFEAIMELKNGKVD 174

Query: 179 AAMQGSETLPYLKTQEKDMYKTVGLPISKQFTGLGVSKKKPELSEAVKVAMQSMVDDGSY 238
             +  SE       +  ++ K + L    +F G  V+K +PEL  ++   + +M  +G Y
Sbjct: 175 LVLFDSEPAANYLAKNPEL-KLISLDFPPEFYGFAVAKSQPELLASINKTLATMKQNGEY 233

Query: 239 QAILKK 244
            A+L K
Sbjct: 234 DALLAK 239