Pairwise Alignments

Query, 295 a.a., Polysaccharide deacetylase from Pseudomonas fluorescens FW300-N1B4

Subject, 334 a.a., polysaccharide deacetylase family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.9 bits (159), Expect = 1e-15
 Identities = 67/276 (24%), Positives = 114/276 (41%), Gaps = 25/276 (9%)

Query: 7   WPNGYRCAVVLTVDYN----DIHGILTQAPEVAGRDKTL--SVWRYGTQRGVERLLKLFE 60
           WPNG +  + +++ +     D +      P   G   T+  S + YG   G+ RLL+L+ 
Sbjct: 56  WPNGEQLVISISMQFEAGAQDKNAEGPFPPMEQGYPDTITPSWYDYGMNEGIPRLLRLWR 115

Query: 61  ELGVSSTWCIPGIVAEENPQHIRAIQAGGHEIACAGYRHQNYDKLTLAEQSAEVAKGCAT 120
           +  +  T  + G  AE +PQ  + +   GHEIA  G        ++ A++ A   +   T
Sbjct: 116 KHHIQVTSHMVGRAAELHPQLAKQVADEGHEIAGHGQTWTPQFSMSPAQERASYIESINT 175

Query: 121 LSALTGQRPTGFRIPAGNGAPGFIEALREHGIRWDSSWRGDDLPFAHPTAPEVIELP--- 177
           L  +TGQRP GF       +   +  L++ G      +  DDL    P+   V   P   
Sbjct: 176 LEKITGQRPIGFNAFWMRHSTQTLNILQDLGF----IYHIDDLSRDEPSITPVQGKPFAV 231

Query: 178 LHYELEDEPYFAFNLSPAVPPAQSRIASYSHTLGNLQMDFAGFHRFGL----CYVLRLHP 233
           + Y L +     F  + A+  A          L  L+ +F   ++ G+       + +H 
Sbjct: 232 VPYTLRNNDIGRFGGNTAMTAAD--------FLQELKDEFDMLYQEGVSQRRMMSISVHD 283

Query: 234 EIIATPGRIGVLRELLQSIQQHDDVWIATGAEVAQW 269
            I  TPG    L + +Q  ++H  V       +A+W
Sbjct: 284 RIGGTPGLANALDKFIQYAKEHSKVGFMRKDAIAKW 319