Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein CmeA from Pseudomonas fluorescens FW300-N1B4

Subject, 380 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  289 bits (739), Expect = 1e-82
 Identities = 156/366 (42%), Positives = 238/366 (65%), Gaps = 17/366 (4%)

Query: 7   ARLSLIALALTLSAC-DQSSTAEEQAPLATVRVETVEARPLSISSELSGRIVAPRIAEVR 65
           A +S++A+A+ L+ C ++++   +Q P   V + T++A P ++++EL GR  A RIAEVR
Sbjct: 9   ALMSILAMAVFLAGCQEEAAPPAQQKP--KVGIVTLQAEPFAVTTELPGRTRAYRIAEVR 66

Query: 66  ARVAGVVLQQAFREGSDVKKGDVLFRIDPAPFKADLDSAEAALRKAEANAFQARLQEQRY 125
            +V G++ ++ F EGSDVK G  L++ID + ++A L SA+A++  +++ A        RY
Sbjct: 67  PQVNGIIQKRLFTEGSDVKAGQQLYQIDASVYEATLKSAQASVASSKSLA-------DRY 119

Query: 126 AQLIEGNAISGQDYDNARANARQTAADVAANKAAVERAKLNLGYATVTAPISGRIGRALV 185
           A+L++  A+S Q YD ARA + Q  A++       ERA++++ Y  V APISGR+GR+ V
Sbjct: 120 AELVKDQAVSKQAYDEARAASLQAEAEL-------ERARIDVRYTKVLAPISGRVGRSAV 172

Query: 186 TEGALVGQNETTPLALIQQLNPIHADLTQSTRELNDLRRAFRSGQLKEVGQGQAKATLIQ 245
           TEGALV   +   LA IQQL+PI+ D+TQ  R+L  LRR    G+L++ G   AK TL  
Sbjct: 173 TEGALVSNGQAQELATIQQLDPIYVDVTQPARDLLALRRDLAEGRLQKSGDNAAKVTLKL 232

Query: 246 DDGSLYPLPGKLLFTDITVDPGTGQIILRSEFPNPDLDLLPGSFVRVRLEQAFNQQGISV 305
           +DGS Y   GKL F+++TVD GTG + LR+ FPNPD DLLPG FV  +L      + I V
Sbjct: 233 EDGSDYAHEGKLEFSEVTVDAGTGSVTLRAVFPNPDKDLLPGMFVHAQLVAGMKSEAILV 292

Query: 306 PQRAIQRDSAGIAQVLVLDAEQRVGQQPVELGAVQNDRWIVTNGLKPGDRIVTEGLQHAR 365
           PQ+ + R++ G    +V++AE +V  +P++      +RW+V  GL+PGDR++TEGLQ  +
Sbjct: 293 PQQGVTRNTKGDPTAMVVNAESKVEVRPIKTERAVGNRWLVGEGLQPGDRVITEGLQFIQ 352

Query: 366 PGEKVQ 371
           PG +V+
Sbjct: 353 PGVEVE 358