Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein CmeA from Pseudomonas fluorescens FW300-N1B4

Subject, 417 a.a., multidrug resistance protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  329 bits (843), Expect = 1e-94
 Identities = 177/382 (46%), Positives = 250/382 (65%), Gaps = 1/382 (0%)

Query: 2   SKNLLARLSLIALALTLSACDQSSTAEEQAPLATVRVETVEARPLSISSELSGRIVAPRI 61
           S+N L  + L+ L   L+ C+Q   A   AP   V    V  RP+++++EL GRI A  +
Sbjct: 5   SRNTLL-IVLVMLVAVLAGCNQEQRATGPAPEPEVATVVVRPRPVTLTTELPGRISALLV 63

Query: 62  AEVRARVAGVVLQQAFREGSDVKKGDVLFRIDPAPFKADLDSAEAALRKAEANAFQARLQ 121
           +EVR +V G++ ++ FREG+DVK GDVL++IDPA ++A  DSA A+L +AEA    ARL+
Sbjct: 64  SEVRPQVGGIIQKRLFREGADVKAGDVLYQIDPAVYRAAHDSALASLARAEAALEPARLK 123

Query: 122 EQRYAQLIEGNAISGQDYDNARANARQTAADVAANKAAVERAKLNLGYATVTAPISGRIG 181
             RYA L++ N +S QD D+A+A   Q  A+VAA +AAV++A+++L Y  VTAP+SGRIG
Sbjct: 124 AGRYADLVKVNGVSKQDNDDAQAAYGQAKAEVAAARAAVQKARIDLEYTRVTAPVSGRIG 183

Query: 182 RALVTEGALVGQNETTPLALIQQLNPIHADLTQSTRELNDLRRAFRSGQLKEVGQGQAKA 241
           R+ VT GALV  N+ TPLA +QQ +P++ D+TQST +L  LRRA   G+L++ G   AK 
Sbjct: 184 RSSVTPGALVTANQATPLATVQQTDPVYVDVTQSTGDLLRLRRALADGKLRKAGADGAKV 243

Query: 242 TLIQDDGSLYPLPGKLLFTDITVDPGTGQIILRSEFPNPDLDLLPGSFVRVRLEQAFNQQ 301
            L+ +DG+ Y   G L F+DITVDPGT  + LR+ FPNP  DLLPG +VR  LE+  N+ 
Sbjct: 244 KLLFEDGTTYAQEGALQFSDITVDPGTSVVTLRALFPNPRRDLLPGLYVRAVLEEGVNEH 303

Query: 302 GISVPQRAIQRDSAGIAQVLVLDAEQRVGQQPVELGAVQNDRWIVTNGLKPGDRIVTEGL 361
            I VPQ A+ RDS G   V+++ A   V ++ + +  V    W+V +GL  GDR++ EGL
Sbjct: 304 AILVPQAAVTRDSKGNPVVMLVSAGNTVERRSIRVERVVGSDWLVGDGLAEGDRVIVEGL 363

Query: 362 QHARPGEKVQIDDTPLPLAQVS 383
           Q  RPG KV++ D   P A  +
Sbjct: 364 QKIRPGAKVRVVDAGSPPASAA 385