Pairwise Alignments

Query, 544 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N1B4

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  284 bits (726), Expect = 7e-81
 Identities = 182/564 (32%), Positives = 300/564 (53%), Gaps = 33/564 (5%)

Query: 4   LRSVSISRRLWLI----LIVAVVMLLTLGVLMLKQ--------IHDDLYQAKAQKTQHVV 51
           + ++S+  +L L+    LI  +++L+TL   + ++            L   + Q+ +   
Sbjct: 1   MSNLSLRNKLLLLSLFPLIFTLLVLITLSYYVEQESLAEEVVTFRTKLVGERKQQIKEAT 60

Query: 52  QTASGILTYYHGLETAGTLTRDAAQKQALTAVRGLRYDQNDYFWINDLTPVMVMHPTNPK 111
           + ASGI+ Y   L+  G + +         A+R +R+    YF++ D     + H   P 
Sbjct: 61  EIASGIVNYQLSLKDKGNVNQ---------ALRDIRFGSAGYFFMYDSQGKNIFHALMPN 111

Query: 112 LEGQNLSTIRDPDGFALFNEMVAIAKAKGAGMVDYRWPKPGASAPVEKTSYVKLFEPWGW 171
           LEGQN   + DP G  +   ++  AK +G G   Y + KP  +  +EK S+V +     W
Sbjct: 112 LEGQNKIDMTDPRGTKIIVGLLDAAK-RGDGNFSYYYQKPNTNEQIEKISFVMMVPGTDW 170

Query: 172 VIGSGVYIDDMQA--EFYAQ-----VWKASFVGLVIALIM----ALLVIMIARSIVRPLQ 220
           ++G+G YIDD++A  E Y Q     + + S + L+IAL++    A ++++ A  +V P++
Sbjct: 171 MLGTGAYIDDIEAVVEDYRQTVTEQMAEKSLMILLIALVLTGATAFVIMVAAHRMVVPIK 230

Query: 221 ETVNAMANIASGESDLTRSLDTHGQDEVTQLARHFNAFTAKLRLVISQLQVSAGALGQSS 280
              + + +IA GE DLT+ L   G+DE+ QL R FN F  KL+ +I  +  +   +  ++
Sbjct: 231 NMADNLNDIAKGEGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAA 290

Query: 281 NELGNDAAQAQQRSQQQSQQMELVATAINEVTYGVQDVAKNAEHAASEMRNAESQAQQGQ 340
           N + +       +    + + + V TAI E++    +VA+N    A   + A       Q
Sbjct: 291 NAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQ 350

Query: 341 VNIDGSLQQIDKLSSTIDQAVEVIRTLAAESTQIGSVLEVIRSIAEQTNLLALNAAIEAA 400
             +D SL++I  L   I+ A   I++L+ +S +I SVL VI  IAEQTNLLALNAAIEAA
Sbjct: 351 RCVDASLEEIAALMEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAA 410

Query: 401 RAGEQGRGFAVVADEVRLLAQRTQKSTAEIQSMIERLQSHSEAAVKVIGDSSRASQLTIE 460
           RAGEQGRGFAVVADEVR LA RTQ ST EI  M+  L      AVK + +S ++   ++E
Sbjct: 411 RAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDESQQSCVRSVE 470

Query: 461 QAGLAGASLNAIGQALRNLNGLNASIASATLQQAHVVEDINQNVTQAAGLSHSTALAAEQ 520
            +     SL ++  A+  +N ++  IA+A  +Q+ V E+IN+NV     + +    ++E 
Sbjct: 471 SSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHSSEH 530

Query: 521 SSVASVHLKELSEQLNGLLKQFRV 544
           ++  S  + +    L  L+ QF++
Sbjct: 531 AARVSQTVSQEGTNLGNLVGQFKI 554