Pairwise Alignments

Query, 357 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  161 bits (407), Expect = 2e-44
 Identities = 101/353 (28%), Positives = 172/353 (48%), Gaps = 48/353 (13%)

Query: 1   MLAYIFRRLLLIIPTLLGILLINFVIIQAAPGGPVEQMIAKLEGFEGATSRIAGGGAEVS 60
           ML +I +R+   IPT+L ++ I+F +++ APG P                          
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNP-------------------------- 34

Query: 61  VAGSAYRGAQGLDPALVKEIEHMYGFDKSAPERLWIMIKNYATLDFGDSF-FRDAKVIDL 119
                +   + L P ++  I   YG DK   E+    + N    DFG SF ++D  V +L
Sbjct: 35  -----FSSERPLPPEVMANINAKYGLDKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNEL 89

Query: 120 IKEKLPVSISLGLWSTLIMYLVSIPLGIAKATRHGSHFDVWTSSAIIVGYAIPAFLFAIL 179
           I   LPVS+ +GL + +   ++ + +G   A +  +  D    S  ++G  +P+F+ A +
Sbjct: 90  IASALPVSVKIGLAAFVFTVIMGVTVGTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPV 149

Query: 180 LIVVFAGGSYFDWFPLRGLTSNNFDELSTGGKILDYFWHLALPVTALVIGNFATMTLLTK 239
           LI +FA    F  FP  G     F+             ++ALPV  + +   AT   +T+
Sbjct: 150 LIYIFA--IQFSLFPAGGWQDGGFE-------------YMALPVLGMSLLYVATFARITR 194

Query: 240 NSFLDEINKQYVVTAKAKGLTRHRVLYGHVFRNAMLLVIAGFPSAFIGIFFTGSLLVEVI 299
            S ++ +N  ++ TA+AKGL+   ++  H  + A+L V++    AF+GI  TGS+++E I
Sbjct: 195 GSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAFVGII-TGSVVIETI 253

Query: 300 FSLDGLGLMSFEAAINRDYPVVFGTLFIFTLLGLVVKLIGDLTYTFVDPRIDF 352
           F L G+G +   AA NRDY +V G   +   L ++   I D+   ++DP+I +
Sbjct: 254 FGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306