Pairwise Alignments

Query, 357 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 339 a.a., oligopeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  188 bits (478), Expect = 2e-52
 Identities = 113/347 (32%), Positives = 184/347 (53%), Gaps = 31/347 (8%)

Query: 5   IFRRLLLIIPTLLGILLINFVIIQAAPGGPVEQMIAKLEGFEGATSRIAGGGAEVSVAGS 64
           + R+L  ++   LGI +I F +I  APG P +         E   + +AG  A       
Sbjct: 16  MLRKLAWMVVVFLGITVICFWVIHLAPGSPTD--------LETTMNPLAGAEAR------ 61

Query: 65  AYRGAQGLDPALVKEIEHMYGFDKSAPERLWIMIKNYATLDFGDSFFRDAK-VIDLIKEK 123
                        K +E +YG D+    +    +     LDFG+S   D + V++ I+E+
Sbjct: 62  -------------KRLESIYGLDQPLYVQYAQWLGRLVRLDFGNSMSSDGRPVMERIRER 108

Query: 124 LPVSISLGLWSTLIMYLVSIPLGIAKATRHGSHFDVWTSSAIIVGYAIPAFLFAILLIVV 183
           LP+++ + + +  +  L+++P+G+A A   G  FD   +  + +G+A+P F  A+LL++ 
Sbjct: 109 LPLTVGMNVAALFLTLLLAVPIGVASAHWQGGWFDRGMTVLVFIGFAMPGFWLALLLMLF 168

Query: 184 FAGGSYFDWFPLRGLTSNNFDELSTGGKILDYFWHLALPVTALVIGNFATMTLLTKNSFL 243
           F  G +  W PL GLTS ++  LS  GK LD   HLALP+     G+ A M+   +++ L
Sbjct: 169 F--GIHLGWLPLSGLTSLDYATLSPWGKFLDVARHLALPLFIYTFGSLAGMSRFMRSAML 226

Query: 244 DEINKQYVVTAKAKGLTRHRVLYGHVFRNAMLLVIAGFPSAFIGIFFTGSLLVEVIFSLD 303
           + + + Y++TA+AKGL    V++ H  RNA+L VI     +  G+   GS+++E IF+L 
Sbjct: 227 EVLRQDYILTARAKGLPTRTVIFRHALRNALLPVITILGLSLPGL-IGGSVIIESIFALP 285

Query: 304 GLGLMSFEAAINRDYPVVFGTLFIFTLLGLVVKLIGDLTYTFVDPRI 350
           GLG + + A + RDYP++ G L +  +L     LI DL Y   DPRI
Sbjct: 286 GLGQLFYTAVMARDYPLIMGNLVLGAVLTQAGNLIADLCYGLADPRI 332