Pairwise Alignments

Query, 357 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 373 a.a., ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  414 bits (1065), Expect = e-120
 Identities = 212/359 (59%), Positives = 265/359 (73%), Gaps = 8/359 (2%)

Query: 4   YIFRRLLLIIPTLLGILLINFVIIQAAPGGPVEQMIAKLEGFEGAT--SRI-AGGGAEVS 60
           Y+ RRLLL++PTLLGI+ INF ++Q APGGPVEQ IA+LEG +GA    RI AG G ++ 
Sbjct: 14  YMLRRLLLVLPTLLGIVTINFFVVQLAPGGPVEQYIARLEG-DGAAYMERIGAGDGGDMQ 72

Query: 61  VAG----SAYRGAQGLDPALVKEIEHMYGFDKSAPERLWIMIKNYATLDFGDSFFRDAKV 116
            A     +AY+GA GL P  V+ I   YGFD+   ER   M+ ++A   FGDS F+   V
Sbjct: 73  PAADDGTAAYKGAAGLSPQAVEAIRRQYGFDRPILERYVTMLGDFALFRFGDSLFKGRSV 132

Query: 117 IDLIKEKLPVSISLGLWSTLIMYLVSIPLGIAKATRHGSHFDVWTSSAIIVGYAIPAFLF 176
           IDL+ + +PVS+SLGLWSTL++Y VSIPLG+A+A R GS FD  +  A+I  +AIPAFL 
Sbjct: 133 IDLVGDAMPVSLSLGLWSTLVIYAVSIPLGMARALRRGSRFDTMSGIAVIAAHAIPAFLL 192

Query: 177 AILLIVVFAGGSYFDWFPLRGLTSNNFDELSTGGKILDYFWHLALPVTALVIGNFATMTL 236
           A+LLIV+FAGGSY  WFPLRGL S   D L  G ++LDY  H+ LPVTA+V+G FA +T 
Sbjct: 193 AVLLIVLFAGGSYLQWFPLRGLVSPGHDALPFGARVLDYAHHMVLPVTAMVVGGFAGLTS 252

Query: 237 LTKNSFLDEINKQYVVTAKAKGLTRHRVLYGHVFRNAMLLVIAGFPSAFIGIFFTGSLLV 296
           LT+N+FLDE+ K YV TA AKGLTR  VL+ HVFRNAMLLVI+G P AF+ +FFTGSLL+
Sbjct: 253 LTRNAFLDELGKAYVETALAKGLTRKAVLWRHVFRNAMLLVISGLPGAFVRVFFTGSLLI 312

Query: 297 EVIFSLDGLGLMSFEAAINRDYPVVFGTLFIFTLLGLVVKLIGDLTYTFVDPRIDFESR 355
           E IFSL+GLGLM FEAA+ RDYPV+F +L++FTL+GL   L GD+    VDPRIDFE R
Sbjct: 313 ETIFSLNGLGLMGFEAAMQRDYPVMFASLYVFTLIGLTASLAGDMLCMAVDPRIDFERR 371